SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22270

Length: 2075 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene22270
CGTCGTGACCTTGGCTGTCACTCAGTAATGTTTTGAATTTTGCCACATTCAACTTATTCTTTTCTTGATCTCTGCATTATATCTTGTCTACAGTCCAGTGCTTTGGATTGTAAGATCCTTCTTGCATTCGTTCGCCTGAATCTTTTCGTAGGGCCCGAGTTTGAATTCCATGGCAGCGACTCTGCATATGGCTGGTTCGATTCCGGGGTTTCGCGTGAATCCCAATGCTGATCAGCGAGGCGGAGTAGGAGCCTCGATCACGATTGCGCCCTCTGCCATATTTGGGGGACAGAGTATCACCTTCTCTGAAGAAGGGATTTCTTGCAGATAAATTTGTCGGGGATCATGGCAGCAGGAGATCGGATACAAGAAAAAGAAGTGGAGAGGCGTTCTCCGTGCTCACAGATGTTCCCAAGGAAATCCTGACTTTGCAAGTGCCCAAGTTTGAAAAGCCCATTGCAGACCCAAAATCAGTTTGTTCTGTCATATTGGGTGGGGGAGCCGGGACACGCCTTTTTCCCCTCACAAGGAGAAGAGCCAAGCCAGCAGTACCAATTGGGGGATGTTACAGGTTAATTGATGTGCCAATGAGCAATTGTATTAATAGTGGCATCAACAAGATTTTTATCCTGACTCAATTCAACTCTGCATCACTTAATCGCCACATTGCCCGGACGTACAGTTTTGGGAATGGTGTAAACTTTGGGGATGGCTTCGTCGTGACCTTGGCTGTCACTCAGACGCCAGGTGAAGATGGAATGAAATGGTTTCAGGGCACTGCAGATGCAGTGAGACAATTCACTTGGCTTTTTGAGGATGCCAAGAACAAACATATAGAGCACTTCCTGATTTTGTCTGGTGACCATCTATATCGTATGGATTACATGGACTTTATACAGAGGCACATTGATACTGGGGCTGATATAACAATCTCCTGCGTTCCGATGGATGACAGCCGTGCATCTGATTATGGATTGATGAAAATCAATGACAGAGGTCGAGTGCAATATTTTAGTGAAAAGCCCAAGGGAGCAGACTTGAAAGCAATGGAAGTGGACACAACCAGACCTGGCCTGTCACCCCAAGAGGCTGAAAAGATGCCTTACATTGCTTCAATGGGCATTTATGTCTTCAGGACAGACGTTCTTCTCAAGCTTCTCAAGTGGAGATATCCAACTGCAAATGATTTTGGCTCAGAGATTATTCCTGCGTGTACAAAGGAATACAATGTGCAGGCATATCTTTTTAATGATTACTGGGAGGATATAGGAACAATCAAATCCTTCTTTGATGCAAATTTAGCTCTTGCAACTCAGCCTCCAAAGTTCCACTTTTATGATCCCAAGAAACCTATCTTTACTTCACCTCAATTTCTGCCACCAACAAAAATAGAAAAATGTCAGGTATTGGATTCCATAATTTCACATGGATGTTTTCTCCGAGAATGCAGTGTAGAGCATTCTGTCATAGGCATTCGTTCGCGGTTGGAGTATGGTGCTGAGTTGAAGGAAACAATGATGATGGGGGCTGACTATTATGAAACTGAAGCTGAAATTGCATCCCTATTAGCTGAAGGAAAAGTGCCTATAGGTGTGGGGGAGAATACAAAAATAAGGAATTGTATTATTGACAAAAATGCAAGGATTGGAAAGAATGTCATGATTGTGAACTCAGATAATGTGGAAGAAGCAGAGAGACCATCAGAAGGATTTTATATCCGTTCAGGTATTACTGTAATATTGAAGAACTCCAGAATTAAAGATGGCACTGTGATATAGAGGAGTCCATGTCATTGTGAAGGTGAGCAAGCGAGTATCAAGTTTAGATGGCATATAAAAAATATGTTCCCCAGTAAGGGAGTGCAAAAACGTTTGGCCTATCAAAAGGAAAAAACGAACCTGTAGGAACCATAAATATTGGGGACACAGCTATGTACTGGCAGTGACTGTCAAGAGTTGCACTTGACCAAGATGGGTGAAGGAATATACCGTTACCTGCACCACTGTGTCAAAATTGTACAAGTCTTTCTGCCTTGCAACTGCTAATTATCCATTAATAAAATAATATCGGCAGTG

Ace file of the UniGene sp_v2.0_unigene22270

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=3 Tax=Benincaseae RepID=E5GCI5_CUCME	-	-	70%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	73%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	-
Sma3	Glucose-1-phosphate adenylyltransferase	IPR011831	-	-
Sma3	Nucleotidyl transferase	IPR005835	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPE1

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: EPRSRLRPLPYLGDRVSPSLKKGFLADKFVGDHGSRRSDTRKRSGEAFSVLTDVPKEILTLQVPKFEKPIADPKSVCSVILGGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIFILTQFNSASLNRHIARTYSFGNGVNFGDGFVVTLAVTQTPGEDGMKWFQGTADAVRQFTWLFEDAKNKHIEHFLILSGDHLYRMDYMDFIQRHIDTGADITISCVPMDDSRASDYGLMKINDRGRVQYFSEKPKGADLKAMEVDTTRPGLSPQEAEKMPYIASMGIYVFRTDVLLKLLKWRYPTANDFGSEIIPACTKEYNVQAYLFNDYWEDIGTIKSFFDANLALATQPPKFHFYDPKKPIFTSPQFLPPTKIEKCQVLDSIISHGCFLRECSVEHSVIGIRSRLEYGAELKETMMMGADYYETEAEIASLLAEGKVPIGVGENTKIRNCIIDKNARIGKNVMIVNSDNVEEAERPSEGFYIRSGITVILKNSRIKDGTVI*

Protein Length: 511

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTAATGTTTTGAATTTTGCCACATTCAACTTATTCTTTTCTTGATCTCTGCATTATATCTTGTCTACAGTCCAGTGCTTTGGATTGTAAGATCCTTCTTGCATTCGTTCGCCTGAATCTTTTCGTAGGGCCCGAGTTTGAATTCCATGGCAGCGACTCTGCATATGGCTGGTTCGATTCCGGGGTTTCGCGTGAATCCCAATGCTGATCAGCGAGGCGGAGTAGGAGCCTCGATCACGATTGCGCCCTCTGCCATATTTGGGGGACAGAGTATCACCTTCTCTGAAGAAGGGATTTCTTGCAGATAAATTTGTCGGGGATCATGGCAGCAGGAGATCGGATACAAGAAAAAGAAGTGGAGAGGCGTTCTCCGTGCTCACAGATGTTCCCAAGGAAATCCTGACTTTGCAAGTGCCCAAGTTTGAAAAGCCCATTGCAGACCCAAAATCAGTTTGTTCTGTCATATTGGGTGGGGGAGCCGGGACACGCCTTTTTCCCCTCACAAGGAGAAGAGCCAAGCCAGCAGTACCAATTGGGGGATGTTACAGGTTAATTGATGTGCCAATGAGCAATTGTATTAATAGTGGCATCAACAAGATTTTTATCCTGACTCAATTCAACTCTGCATCACTTAATCGCCACATTGCCCGGACGTACAGTTTTGGGAATGGTGTAAACTTTGGGGATGGCTTCGTCGTGACCTTGGCTGTCACTCAGACGCCAGGTGAAGATGGAATGAAATGGTTTCAGGGCACTGCAGATGCAGTGAGACAATTCACTTGGCTTTTTGAGGATGCCAAGAACAAACATATAGAGCACTTCCTGATTTTGTCTGGTGACCATCTATATCGTATGGATTACATGGACTTTATACAGAGGCACATTGATACTGGGGCTGATATAACAATCTCCTGCGTTCCGATGGATGACAGCCGTGCATCTGATTATGGATTGATGAAAATCAATGACAGAGGTCGAGTGCAATATTTTAGTGAAAAGCCCAAGGGAGCAGACTTGAAAGCAATGGAAGTGGACACAACCAGACCTGGCCTGTCACCCCAAGAGGCTGAAAAGATGCCTTACATTGCTTCAATGGGCATTTATGTCTTCAGGACAGACGTTCTTCTCAAGCTTCTCAAGTGGAGATATCCAACTGCAAATGATTTTGGCTCAGAGATTATTCCTGCGTGTACAAAGGAATACAATGTGCAGGCATATCTTTTTAATGATTACTGGGAGGATATAGGAACAATCAAATCCTTCTTTGATGCAAATTTAGCTCTTGCAACTCAGCCTCCAAAGTTCCACTTTTATGATCCCAAGAAACCTATCTTTACTTCACCTCAATTTCTGCCACCAACAAAAATAGAAAAATGTCAGGTATTGGATTCCATAATTTCACATGGATGTTTTCTCCGAGAATGCAGTGTAGAGCATTCTGTCATAGGCATTCGTTCGCGGTTGGAGTATGGTGCTGAGTTGAAGGAAACAATGATGATGGGGGCTGACTATTATGAAACTGAAGCTGAAATTGCATCCCTATTAGCTGAAGGAAAAGTGCCTATAGGTGTGGGGGAGAATACAAAAATAAGGAATTGTATTATTGACAAAAATGCAAGGATTGGAAAGAATGTCATGATTGTGAACTCAGATAATGTGGAAGAAGCAGAGAGACCATCAGAAGGATTTTATATCCGTTCAGGTATTACTGTAATATTGAAGAACTCCAGAATTAAAGATGGCACTGTGATATAG___AGGAGTCCATGTCATTGTGAAGGTGAGCAAGCGAGTATCAAGTTTAGATGGCATATAAAAAATATGTTCCCCAGTAAGGGAGTGCAAAAACGTTTGGCCTATCAAAAGGAAAAAACGAACCTGTAGGAACCATAAATATTGGGGACACAGCTATGTACTGGCAGTGACTGTCAAGAGTTGCACTTGACCAAGATGGGTGAAGGAATATACCGTTACCTGCACCACTGTGTCAAAATTGTACAAGTCTTTCTGCCTTGCAACTGCTAATTATCCATTAATAAAATAATATCGGCAGTG

Fln Alignment:

Contig22270___RSGEAFSVLTDVPKEILTLQVPKFEKPIADPKSVCSVILGGGAGTRLFPLTRRRAKPAVPIGGCYRLIDVPMSNCINSGINKIFILTQFNSASLNRHIARTYSXXXXXXXXXXXXXTLAVTQTPGEDGMKWFQGTADAVRQFTWLFEDAKNKHIEHFLILSGDHLYRMDYMDFIQRHIDTGADITISCVPMDDSRASDYGLMKINDRGRVQYFSEKPKGADLKAMEVDTTRPGLSPQEAEKMPYIASMGIYVFRTDVLLKLLKWRYPTANDFGSEIIPACTKEYNVQAYLFNDYWEDIGTIKSFFDANLALATQPPKFHFYDPKKPIFTSPQFLPPTKIEKCQVLDSIISHGCFLRECSVEHSVIGIRSRLEYGAELKETMMMGADYYETEAEIASLLAEGKVPIGVGENTKIRNCIIDKNARIGKNVMIVNSDNVEEAERPSEGFYIRSGITVILKNSRIKDGTVI
B8LPE1_______________RSVVSMSLLIEVPKESTLKRV---ESSKADPRTVVSVILGGGAGTRLFPLTKRRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQFNSASLNRHLARAYSFCNGVNFGDGFVEVLAATQRPGEMGKNWFQGTADAVRQFAWLFEDAKNKEIDDILILSGDHLYRMDYMDFVQKHRDSGADITISCIPIDDSRASDFDLMKIDDNGQVLYFSEKPKGDDLKAMGVDTTVLGLSPEDAKKKPYIASMGVYVFKKEILLNLLRWRFHTANDFGSEIIPASAKEYFVKAYLFDDYWEDIGTIKSFFEANLALIAQPPKFSFYDAKKPIYTSPRNVPPTKVDNCKIVDSIVSHGCFLQNCYIEHSIIGIRSRIESDVSLQDAVMLGADYYETDAEVVSLLAEGKVPVGIGQNTKIRNCIIDKNARIGKNVTIANSENIKEADRTEEGFCIRSGITVILKNSTIKDGLVI

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
638		33		66	0.997452
641	80	20			0.995493
642	20			80	0.995493
644		25	25		0.995533
645			20	80	0.995493
722		57		42	1.0
727	42			57	1.0
729	57	42			1.0
732		42		57	1.0
734	42		57		1.0
737	42			57	1.0
739		42		57	1.0
803	90		10		0.90298
804	90	10			0.90298
812		10	90		0.90298
813	10		90		0.90298
852		70		30	1.0
858	30			70	1.0
948		30		70	1.0
987	10		20		0.999998
988	20		80		0.999996
1069	60		40		1.0
1070	40			60	1.0
1073		40		60	1.0
1074	40		60		1.0
1075	40			60	1.0
1083		20		40	1.0
1090		60		40	1.0
1111		10		90	0.90298
1115	20	70	10		0.999998
1116		20		80	0.999996
1117			10	90	0.90298
1120	90	10			0.90298
1129	90	10			0.90298
1131		10	90		0.90298
1132	10		90		0.90298
1209	90	10			0.90298
1211	90			10	0.90298
1212		10	90		0.90298
1213	90		10		0.90298
1215			10	90	0.90298
1218		10		90	0.90298
1220		90		10	0.90298
1223		90	10		0.90298
1224		10	90		0.90298
1233		10	90		0.90298
1234			90	10	0.90298
1494	25		75		0.996473
1795	10		90		0.90298
1816		50		50	1.0
1867			25	75	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain