SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22257

Length: 415 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene22257
CGTCGTGACCTTGGCTGTCACTCATTTTTCTTCTCGTGGGCATCCATCGTCTTCTCAACTATTTCTTCTGTTCTTTTTGGAAGAGCCCAAGGGATCGTTTAGGTTGACTCATGGCTGGGGATAACGAAGAGTCACGAGATCGAGTCGCAGCGGGCAATTACAAGAAACTGGCGCGAGGTCAGGTTGAGGTTGCTAGCAATATTGACATCCTGAACCAGATATTCAAGCATCTGGACCCCGCGTCTTTGGCCATGGCTTCTTGCGTCACCAAGAGATGGAAGCAGGTCACCGACGACGAGGGTCTGTGGGAAGGCATCTGCACGCGCCATTGGCCATCCACCGCCTCGCTTCAGAGCGGGCAGTTGAAATCGGTGTTGGTGGGTTTGGGCGGTTTCAGGCGTCTGTACGTCAACTG

Ace file of the UniGene sp_v2.0_unigene22257 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative F-box GID2 protein n=1 Tax=Selaginella moellendorffii RepID=A9LY18_SELML	-	-	5.0e-16	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	82%
Blast2go	f-box protein gid2-like	-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of gibberellic acid mediated signaling pathway	GO:0009939	Biological Process	72%
Blast2go	seed germination	GO:0009845	Biological Process	72%
Blast2go	seed dormancy process	GO:0010162	Biological Process	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	SCF ubiquitin ligase complex	GO:0019005	Cellular Component	72%
Blast2go	nucleus	GO:0005634	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRM7

Fln msg: Distance to subject end: 131 aas, your sequence is shorter than subject: 101 - 233

Fln protein: MAGDNEESRDRVAAGNYKKLARGQVEVASNIDILNQIFKHLDPASLAMASCVTKRWKQVTDDEGLWEGICTRHWPSTASLQSGQLKSVLVGLGGFRRLYVN

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTCTTCTCGTGGGCATCCATCGTCTTCTCAACTATTTCTTCTGTTCTTTTTGGAAGAGCCCAAGGGATCGTTTAGGTTGACTC_-_ATGGCTGGGGATAACGAAGAGTCACGAGATCGAGTCGCAGCGGGCAATTACAAGAAACTGGCGCGAGGTCAGGTTGAGGTTGCTAGCAATATTGACATCCTGAACCAGATATTCAAGCATCTGGACCCCGCGTCTTTGGCCATGGCTTCTTGCGTCACCAAGAGATGGAAGCAGGTCACCGACGACGAGGGTCTGTGGGAAGGCATCTGCACGCGCCATTGGCCATCCACCGCCTCGCTTCAGAGCGGGCAGTTGAAATCGGTGTTGGTGGGTTTGGGCGGTTTCAGGCGTCTGTACGTCAACTG

Fln Alignment:

Contig22257___MAGDNEESRDRVAAGNYKKLARGQVEVASNIDILNQIFKHLDPASLAMASCVTKRWKQVTDDEGLWEGICTRHWPSTASLQSGQLKSVLVGLGGFRRLYVN
A9NRM7_______________MARVDEESRDRVAAGKYKKLALCQDEVASNVDMLNEIFKHLDAASLAMASCVSKKWKQATDDEGLWEAICTRHWPSTASSQSGQLKSVVVALGGFRRLYVN

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
114		25	75		0.996473
128		25	75		0.996473
131	75		25		0.996473
143		75		25	0.996473
145		75		25	0.996473
242	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain