SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22069

Length: 1518 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22069

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AP2 domain-containing transcription factor (Fragment) n=2 Tax=Populus trichocarpa RepID=B9GM80_POPTR	-	-	59%
FL-Next	tr=AINTEGUMENTA-like protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	59%
Blast2go	ap2-like ethylene-responsive transcription factor bbm	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	seed germination	GO:0009845	Biological Process	73%
Blast2go	root development	GO:0048364	Biological Process	73%
Blast2go	organ morphogenesis	GO:0009887	Biological Process	73%
Blast2go	stem cell maintenance	GO:0019827	Biological Process	73%
Blast2go	pattern specification process	GO:0007389	Biological Process	73%
Blast2go	positive regulation of embryonic development	GO:0040019	Biological Process	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Sma3		IPR000173	-	-
Sma3	AP2/ERF domain	IPR001471	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Zein-binding domain	IPR007656	-	-
Sma3	DNA topoisomerase, type IIA, conserved site	IPR018522	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q76H96

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 25 aas, your sequence is shorter than subject: 360 - 606

Fln protein: VVTLAVTHLKYWGPRTTTNFPISQYREALEEMQNLTRQEFVSSLRRKSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGSEKEAAEAYDIAAIKFRGRNAVTNFDMSKYDVKTIESCTLPIGAAKRLKSEAESAVDGPVNNGLSNDEECTLSSQTEATSYTGNAALRNEWLPLISLQQKSNPLQVQYQLQKVPLYNQDLQMQMHNVNQQKYLQANGSTHELSNLISLGSAVNNNSNNASSSTPGIYTNIPNALAINSLMGANPSDRSAVIFGETSELSASAKPLTYGNMLMSPEQFARNNLYYLYQQQQQQQSPGLFKAAGDNMAYNNGMEARSNLKVGHGPMFSVFDD*

Protein Length: 361

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCAAATACTGGGGACCTAGAACAACTACAAACTTTCCTATTAGCCAATACAGAGAGGCTCTGGAGGAGATGCAGAACTTGACCAGGCAAGAATTTGTTTCGTCGCTCAGGAGAAAGAGTAGTGGTTTTTCAAGGGGTGCATCAAAATATCGGGGAGTAACCAGACACCATCAACATGGAAGGTGGCAAGCTCGTATTGGAAGAGTTGCAGGAAACAAAGATCTTTATCTGGGAACATTTGGTTCAGAGAAAGAGGCAGCTGAGGCCTATGACATTGCTGCCATCAAATTCAGAGGCCGTAATGCTGTGACAAACTTTGACATGAGTAAATATGATGTGAAAACTATTGAAAGCTGCACATTGCCCATAGGAGCTGCAAAGCGTCTAAAATCTGAAGCCGAGTCAGCTGTGGATGGACCAGTGAATAATGGTCTCAGTAACGATGAGGAGTGTACATTGAGTTCACAGACAGAGGCAACTAGTTATACTGGTAATGCAGCTCTAAGAAACGAGTGGCTGCCTCTTATATCTCTCCAGCAGAAATCAAACCCATTGCAGGTACAATATCAGCTGCAAAAGGTGCCATTATACAATCAGGACCTCCAAATGCAAATGCACAATGTTAATCAGCAGAAATATCTTCAGGCCAACGGTAGTACTCATGAGCTAAGCAACCTTATCAGCTTGGGATCTGCTGTCAATAATAACAGTAATAATGCTAGCAGCTCCACCCCAGGAATTTACACCAATATTCCCAATGCTTTGGCCATCAATAGTCTAATGGGGGCCAATCCATCTGATCGTAGTGCAGTCATCTTCGGTGAAACTTCAGAACTATCAGCTTCTGCAAAACCCTTGACTTATGGAAACATGTTAATGTCTCCAGAGCAGTTTGCAAGGAATAATTTATATTACTTATACCAGCAGCAACAGCAGCAGCAATCTCCAGGCCTTTTCAAAGCTGCCGGTGATAATATGGCATATAACAACGGGATGGAAGCAAGGTCTAATCTCAAAGTAGGCCATGGCCCCATGTTCTCAGTTTTTGATGATTAG___CAGGGCTAAAGCCCTGTCAGCTGGTTATATATATTTGCATTATAATTTAATTTAACGTTTGTCTTTAGGGCTACGATATTAGTCCTGGTTTGGAATGTTTAAGTTTCTCAGGCCAACTAGCTACTGGGTATTAACAACAAAGAGGACTTGCAGAGAAATCTGCAAGCCAGGTTGCCTGGAAATGCATTTTGCGGTAGGATTAGGTCTCCAAGCACATGAAATCGTTACTGTTACTAGCTTCCTTTGTTTTTTTTCAACAATATCCGGATATATATTGTGATAGAAATACTATATTTTCTCCCTTCAGCTAGGAGAATGTCTATACTTATGTGTATGTAAAAACTGTTTATCATCTCAAATGCCATGGGTGACATTGATTGAATGTATTTCCACAGAAGCTCTTTAATCTTTTTGTGCATGTATCTGGCTCTAGCTTT

Fln Alignment:

Contig22069___LKYWGPRTTTNFPISQYREALEEMQNLTRQEFVSSLRRKSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGSEKEAAEAYDIAAIKFRGRNAVTNFDMSKYDVKTI-ESCTLPIG----AAKRLKSEAESAVDGPVNNGLSNDEECTLSSQTEATSYTGNA
Q76H96_______________LKYWGPSTHINFPLETYEKEIEEMKNMTRQEYVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGISAVTNFDISKYDVQRICSSSTLIAGDLAKRNKEIEQSSEPSGDSPLQIEAAAPLQIEAAHNSQSRSHNDNA

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
42		66	33		0.997452
44	66	33			0.997452
47	66		33		0.997452
50	66	33			0.997452
51	66			33	0.997452
52		66		33	0.997452
53			33	66	0.997452
54	66		33		0.997452
56	66			33	0.997452
57	66		33		0.997452
58	66			33	0.997452
60	33			66	0.997452
61		33		66	0.997452
64	33	66			0.997452
159	66	33			0.997452
161			66	33	0.997452
162		33	66		0.997452
168		33		66	0.997452
171	66			33	0.997452
172	66			33	0.997452
173	66		33		0.997452
175	66	33			0.997452
177	66		33		0.997452
180	33		66		0.997452
181		33	66		0.997452
182			66	33	0.997452
183		33	66		0.997452
825	87		12		0.992554
832		12		87	0.992554
834			87	12	0.992554
836	87		12		0.992554
844		11	88		0.923564
888		66		33	1.0
890			33	66	1.0
895		33		66	1.0
902	66			33	1.0
903	66		33		1.0
904	66			33	1.0
907		8		75	0.99999
908		16	66	8	0.999991
909	8	16		75	0.99999
1063	6	6	12	6	0.999932
1088		11	88		0.999937
1089	88		11		0.999937
1091		11	88		0.999937
1092	88		11		0.999937
1094			11	88	0.999937
1096		11	88		0.999937
1098	88			11	0.999937
1099			88	11	0.999937
1105	88			11	0.999937
1106	88	11			0.999937
1120		13	86		1.0
1123			13	86	1.0
1125		13		86	1.0
1126	86	13			1.0
1130	86		13		1.0
1131			13	86	1.0
1132		13		86	1.0
1138	9	4		86	0.999642
1156			7	92	0.999532
1159	7			92	0.999532
1161		7		92	0.999532
1169		7		92	0.999532

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain