SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22064

Length: 814 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22064

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Arabidopsis thaliana] gb\|AAL67014.1\| putative RNA helicase [Arabidopsis thaliana] gb\|AAM91806.1\| putative RNA helicase [Arabidopsis thaliana] gb\|AEE31492.1\| pre-mRNA-splicing factor ATP-dependent	-	-	3.0e-40	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	pre-mrna-splicing factor atp-dependent rna helicase dhx16	-	-	0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	posttranscriptional gene silencing by RNA	GO:0035194	Biological Process	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	88%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
596	25		75		0.996473
684			87	12	0.992554
784		20	80		0.995493
785	20		80		0.995493
787	80			20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain