SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene22039

Length: 1095 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene22039

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NDR1/HIN1-like 25 [Arabidopsis thaliana] gb\|AED94133.1\| NDR1/HIN1-like 25 [Arabidopsis thaliana]	-	-	6.0e-18	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	protein ndr1-like	-	-	2.95992e-24	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	salicylic acid mediated signaling pathway	GO:0009863	Biological Process	2.95992e-24	55%
Blast2go	defense response, incompatible interaction	GO:0009814	Biological Process	2.95992e-24	55%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWB5

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MHSSPQQRSPTPKNQRIYPTASSSHARKVTPGRKVSPRPYVFKLPNDHEQNHSATPQRASRPSGCLQNPCRLCLAWFSGMLILVFFLLAIAAGLFYVVYRPQLPRYSLDSISIERFNLSTNHTLSSNLIVAVRSQNPNKKIGIYHHGDASQLALSYSGSEIGSGSIPNFDQGCRNTTIVQTMLTASGVPFPANASSALNADQSRATVLLDFELVEPLKLNIIGLKIPVSISVHCNLTVNSLAANQAVRIQQQSCSVRKL*

Protein Length: 261

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAGCCAATCCCATTGTTCGTTGTGACTTGTTTTCATTGCTTTTCTGATGCTCAGAGAAACAAGCAGGG_-_ATGCACTCCTCACCCCAGCAAAGGTCTCCAACGCCGAAGAACCAGCGAATTTATCCTACCGCCTCATCCTCACACGCCCGAAAGGTCACTCCTGGTCGAAAAGTCAGCCCTCGACCATACGTTTTTAAGCTCCCAAATGATCATGAACAGAACCACAGCGCCACGCCACAGCGAGCCTCAAGGCCCTCAGGATGCCTCCAAAATCCTTGCCGTCTCTGCCTCGCCTGGTTTTCCGGCATGCTCATCCTCGTCTTCTTCCTCTTAGCGATAGCGGCCGGCCTCTTCTACGTGGTTTACAGGCCCCAGCTTCCCAGGTATTCACTGGACAGCATCTCCATCGAGCGCTTCAACTTGAGCACCAATCACACTCTAAGCTCTAATCTAATTGTTGCTGTCAGATCTCAGAATCCAAACAAAAAGATCGGAATTTACCACCACGGCGACGCTAGCCAGTTGGCCCTTTCATATTCCGGCAGCGAGATAGGTTCGGGCAGTATCCCTAATTTCGATCAAGGCTGCCGGAATACCACCATTGTGCAGACGATGTTGACGGCTTCCGGCGTCCCGTTTCCTGCCAATGCGAGTTCTGCCCTGAATGCAGATCAGAGCAGGGCCACGGTCCTCCTGGATTTCGAGTTGGTCGAGCCCTTGAAATTAAATATCATCGGTCTGAAAATTCCCGTCTCCATCAGCGTGCATTGCAATCTGACGGTAAACAGTTTGGCAGCCAATCAAGCTGTTCGGATTCAACAACAGAGTTGCAGCGTTAGAAAGTTGTAAGAATGAACAGAGGGAGACAGGAGTATATGCAGTTTAAGGTAGACATAGTTTGAAATATTTAATACCTTAAATTGGGGATTTGTAAATGTATGGAAGGATTTGGTCAGGCTGGGATTTATTTTGTTTCGTATGAGTTTTATTTTATTTATTGTTAATTGGGGGACTGGGTTGGGTTTGGTTTGGTTTAAAGGATGGTGAGATGAGTGTTATTTTAaGTTTTTGA

Fln Alignment:

Contig22039___EKQAGMHSSPQQRSP-TPKNQRIYPTASSSHARKVTPGRKVSPRPYVFKLPNDHEQNHSATPQRASRPSGCLQNPCRLCLAWFSGMXXXXXXXXXXXXXXXYVVYRPQLPRYSLDSISIERFNLSTNHTLSSNLIVAVRSQNPNKKIGIYHHGDASQLALXXXXXXXXXXXXPNFDQGCRNTTIVQTMLTASGVPFPANASSALNADQSRATVLLDFELVEPLKLNIIGLK-IPVSISVHCNLTVNSLAANQAVRIQQQSCSV
A9NWB5_______________EKNAGEYENEKPSSPLVPKS------SAASEKDGVDPP---SGRQMRVQFPRDQVIPTRQIPKYYSRPPK-RRNSCCRCLCYAICFLFALVAIIAITCGILYLVFEPRIPKYSIDSVRITNFSINADLSTNCQFAVNVSARNPNKKIGIYYL-DNGHLAISYSGTELCTGALPVFYQGHKNTTFLDVVLRGTGARLTGAVVSTLKEQQQKASVPLNLKADVPVKIKLGKLKSMKIKVRVRWDLVVDRLDANAKVTTEKSKVSV

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
398	90			10	0.90298
399			90	10	0.90298
401		10		90	0.90298
404		88	11		0.923564
406	87			12	0.992554
407		12	87		0.992554
409		25		62	1.0
414	71		28		1.0
421	83		16		0.994512
422			83	16	0.994512
424	83		16		0.994512
426		83	16		0.994512
427	16	16		66	0.988813
430	83			16	0.994512
432		83	16		0.994512
434	66			33	1.0
435			83	16	0.994512
437	14		85		0.993533
465	83			16	0.994512
466	83	16			0.994512
473	75	16	8		0.99999
593		90	10		0.90298
745			80	20	0.995493
746	60	20			0.99255
747	80		20		0.995493
748	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1044	1058	GGTTT GGTTT GGTTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain