SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21904

Length: 384 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene21904
CGTCGTGACCTTGGCTGTCACTCAATTGTGACGCAAACCAATTTTGGAATGCGAGACGAAGCTTCTTGAGGCGACGTAACATTGCCCGTCACGTCGTGACCTTGGCTGTCACTCAATTCGCGTGATCTTCTAGACTTGAGTTTACTCTGGGCGATTATTTTATCGGGATTTAACTCTGCGAGAAGCGTCATACACAGACGACTGCAAAATGTCTTCCCCTGCAGAGTATTACAATTCACTTCCTCCAGTGAGTAAGGCGTATGGAACCCTTTGCCTTCTAACTACCACAGCTTTTCAGTTGGGATTGATTAATCCAGTATATATGTATCTGGATTACGATCTTGTGGTTAAGCAACTACAGATATGGAGGCTTGTTACCAACTT

Ace file of the UniGene sp_v2.0_unigene21904

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Der1-like family protein [Cynodon dactylon]	-	-	4.0e-13	59%
FL-Next	sp=Derlin-1.1; Zea mays (Maize).	-	-	0.0	63%
Blast2go	derlin-1	-	-	1.21795e-20	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair cell tip growth	GO:0048768	Biological Process	1.21795e-20	77%
Blast2go	response to red light	GO:0010114	Biological Process	1.21795e-20	77%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	1.21795e-20	77%
Blast2go	response to far red light	GO:0010218	Biological Process	1.21795e-20	77%
Blast2go	response to high light intensity	GO:0009644	Biological Process	1.21795e-20	77%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.21795e-20	77%
Blast2go	membrane	GO:0016020	Cellular Component	1.21795e-20	77%
Blast2go	nucleus	GO:0005634	Cellular Component	1.21795e-20	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, CCHC-type	IPR001878	-	0.0	-
Sma3	Derlin	IPR007599	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q4G2J6

Fln msg: Distance to subject end: 184 aas, your sequence is shorter than subject: 58 - 243

Fln protein: MSSPAEYYNSLPPVSKAYGTLCLLTTTAFQLGLINPVYMYLDYDLVVKQLQIWRLVTN

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGTGACGCAAACCAATTTTGGAATGCGAGACGAAGCTTCTTGAGGCGACGTAACATTGCCCGTCACGTCGTGACCTTGGCTGTCACTCAATTCGCGTGATCTTCTAGACTTGAGTTTACTCTGGGCGATTATTTTATCGGGATTTAACTCTGCGAGAAGCGTCATACACAGACGACTGCAAA_-_ATGTCTTCCCCTGCAGAGTATTACAATTCACTTCCTCCAGTGAGTAAGGCGTATGGAACCCTTTGCCTTCTAACTACCACAGCTTTTCAGTTGGGATTGATTAATCCAGTATATATGTATCTGGATTACGATCTTGTGGTTAAGCAACTACAGATATGGAGGCTTGTTACCAACTT

Fln Alignment:

Contig21904___MSSPAEYYNSLPPVSKAYGTLCLLTTTAFQLGLINPVYMYLDYDLVVKQLQIWRLVTN
Q4G2J6_______________MSSPAEYYKSLPPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTS

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
88	33		66		0.997452
91	33	66			0.997452
93		50	16	33	1.0
95		28		71	1.0
97	14		42	42	1.0
100	42		28	14	1.0
101		85		14	0.993533
102		57		28	1.0
103			57	42	1.0
105		57	42		1.0
106	28		71		1.0
109		42	57		1.0
110	14		28	57	1.0
111		57		42	1.0
112	42	28		14	1.0
113		42		57	1.0
115		42		57	1.0
116	42			57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain