SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21900

Length: 1817 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21900

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	L-allo-threonine aldolase n=1 Tax=Carica papaya RepID=D7RJ69_CARPA	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	l-allo-threonine aldolase	-	-	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Threonine aldolase.	EC:4.1.2.5	-	0.0	81%

Source	KEGGs	Term	Identity
Blast2go	Glycine, serine and threonine metabolism	00260	81%
Blast2go	Metabolic pathways	01100	81%
Blast2go	Biosynthesis of secondary metabolites	01110	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	threonine catabolic process	GO:0006567	Biological Process	0.0	81%
Blast2go	threonine aldolase activity	GO:0004793	Molecular Function	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Aromatic amino acid beta-eliminating lyase/threonine aldolase	IPR001597	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS20

Fln msg:

Fln protein: MELVSSNAVANGSLPESKSAPRVVDLRSDTVTRPTDAMRAAMANADVDDDVLGSDPTADQLQHQVAKVMGKEAGLFVASGTMGNLISVLVHCEVRGSEVILGSDSHIHLYENGGISTIGQVHPRVVPNKEDGTMDLRKIEASIRCAELYYPTTRLICIENTHANSGGRCITADYTDKLGELAKSYGLKLHVDGARIFNASTALGVPVNQLVSAADSVSVCLSKGLGAPVGSVIVGSQAFIEKAKRLRKTLGGGMRQVGVLCAAGLVALHDMVGRLKDDHHKCRILAEGLNGIDGLHVDLDAVHTNIIFVNITADSIPRAEELCETMKHEGILAIPDGHTRFRFVTHHQISEDDIRYTIACFKNHLQGTLFRSPTVSEIA*

Protein Length: 381

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTATCTCATAATATCTTCATTTCTCTCTCAGGACGTCGGGGGTTCTCATTCAGTCCGCTATATGCTCTGCTCTGCTCTGCTTCCAAATTGCTCCTTGCATGCGTCCAAGCCTTTGTGCTTTTTACTCAGAAGTGTCTGCTGTAGCCTCTGGCACTTTGAAGCTGGCTGGCAGTTCAAACCCATATTCTCTCAACCTGTAAGTTTGCTTCTATAAAGAAGCCCTCGGACTAATATTTTGTTAAATACTTCTGTGACCCC_-_ATGGAACTGGTTTCATCAAATGCCGTGGCCAATGGAAGTCTGCCAGAATCGAAATCTGCACCTCGGGTCGTCGACCTCCGTTCCGACACCGTGACTCGGCCGACCGATGCCATGCGTGCCGCAATGGCGAACGCTGACGTGGACGACGACGTCCTAGGTTCGGATCCCACGGCGGACCAGTTACAGCACCAGGTTGCCAAAGTAATGGGCAAAGAGGCTGGTTTGTTCGTGGCCTCGGGCACCATGGGGAACCTTATCAGCGTTCTTGTTCATTGCGAGGTGAGGGGCAGTGAAGTGATACTTGGTTCAGACAGCCACATACATTTGTATGAAAATGGTGGAATTTCAACAATTGGTCAGGTCCATCCCCGAGTGGTTCCTAACAAAGAAGATGGAACAATGGACCTGAGAAAAATTGAAGCTTCCATTCGGTGTGCAGAGTTATATTACCCTACAACACGCCTCATATGCATAGAGAACACGCATGCGAATTCTGGTGGCAGATGCATTACGGCAGATTATACAGACAAGTTAGGGGAATTAGCTAAGTCATATGGATTAAAACTTCATGTAGATGGAGCTCGCATATTTAATGCTTCCACAGCATTGGGGGTTCCTGTTAATCAGCTTGTTAGTGCTGCTGATTCTGTTTCGGTGTGCTTGTCAAAGGGCTTGGGAGCTCCAGTTGGATCTGTTATCGTGGGTTCACAAGCATTCATTGAAAAGGCTAAGAGGCTTAGGAAGACTTTAGGTGGGGGGATGAGACAAGTTGGAGTATTGTGTGCTGCTGGCCTTGTTGCGTTGCATGATATGGTTGGTCGGCTTAAAGATGACCATCATAAGTGTCGTATTTTAGCTGAGGGTTTGAATGGCATTGATGGGCTTCATGTGGATCTTGATGCCGTTCATACAAATATTATCTTTGTCAATATAACTGCTGATTCAATCCCTAGGGCAGAAGAGCTTTGTGAAACCATGAAGCATGAAGGCATTCTTGCAATTCCTGATGGTCATACCAGATTCAGATTTGTAACACATCATCAGATCTCAGAGGATGATATTCGATACACAATAGCATGTTTTAAGAATCATTTGCAGGGTACTTTGTTTCGGTCGCCAACAGTAAGTGAAATTGCATAA___GGTTTCAAAAAAACCAAGACAGTTTCCCTTTTTTCAGTATGAAAAAGGCGATATATTCATTCCAAAAAGTGTACATAAACATCATAATGCAGCAGCATTTATCAGCAGATCAGAACTGATACAAGTCCATTTGACTTGGTGATCAAACATATTGCCACCATTTTTAGTTATCCTGTCTATATGCACAGTTCTAAACATATATACATAATATTCAAAATGCAGAAATGCCTAAAAGTTCCCTGTTCAGCATCCAATTCCTGTAATAAACAAGATATTATGTGAAAGACACTACAGTGATTTAGAGAAATAGACAGCAAAAAGCCTGATATATTCCATCAGTAGAAGAAAAATTGGATTCAAGGAGAAGTGAATTCATCCTGGCAGTGGCAGCA

Fln Alignment:

Contig21900___MELVSSNAVANGSLPESKSAPRVVDLRSDTVTRPTXXXXXXXXXXXXXXXXLGSDPTADQLQHQVAKVMGKEAGLFVASGTMGNLISVLVHCEVRGSEVILGSDSHIHLYENGGISTIGQVHPRVVPNKEDGTMDLRKIEASIRCAELYYPTTRLICIENTHANSGGRCITADYTDKLGELAKSYGLKLHVDGARIFNASTALGVPVNQLVSAADSVSVCLSKGLGAPVGSVIVGSQAFIEKAKRLRKTLGGGMRQVGVLCAAGLVALHDMVGRLKDDHHKCRILAEGLNGIDGLHVDLDAVHTNIIFVNITADSIPRAEELCETMKHEGILAIPDGHTRFRFVTHHQISEDDIRYTIACFKNHLQGTLFRSPTVSEIA
B8LS20_______________MELVSSNPVANGSLRESKSAPRVVDLRSDTVTRPTDTMRAAMAKADVDDDVLGSDPTADQLQRQVAKLMGKEAGLFVPSGTMGNLISVLVHCEVRGSEVILGSDSHIHVYENGGISTIGHVHPRVVPNKEDGTMDLRKIEASIRPKELLYATTRLICIENTHADCGGRCITAEYTDKLGELAKSYGLKVHVDGARIFNASTALGVPVDRLVSAADSVSVCLSKGLGAPVGSVIVGSQEFIAKAKKLRKTLGGGMRQVGVLCAAGLVALHDMVGRLKDDHHKCRILAEGLNGIDGLHVNLDAVHTNIVFVNITADSIPGAEELCEAMKHEGVLAIPMSHTRFRFVTHHQISEDDIRYTLACFKNHFQGTLLRSPTVSEIA

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
39		33		66	0.997452
40	66		33		0.997452
43			25	75	0.996473
45		75	25		0.996473
48		25		75	0.996473
51		75	25		0.996473
52			25	75	0.996473
55		75	25		0.996473
58	25		75		0.996473
59		25	75		0.996473
60			75	25	0.996473
61	75	25			0.996473
62	25	75			0.996473
100		87		12	0.992554
101			12	87	0.992554
105		87	12		0.992554
107		12	87		0.992554
108	12	87			0.992554
109		12		87	0.992554
112	12	87			0.992554
156	88	11			0.923564
158	88			11	0.923564
159	88	11			0.923564
163		11		88	0.923564
172			88	11	0.923564
174	11	88			0.923564
203		88		11	0.923564
254		44	55		1.0
274	42	57			1.0
442	50		50		1.0
448	50		50		1.0
454	50	50			1.0
1319	76	23			1.0
1410			90	10	0.90298
1527	10			90	0.999898
1695	87		12		0.992554
1774	50	50			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
90	108	TGCTC TGCTC TGCTC TGCT	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain