SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21893

Length: 569 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene21893
CGAATCCTTGTGAAGGGAGCAATGACGCTCAGGACACCAGGCTAGCAGTACAAGCAGGTGCTGCAGGGATAATCGTGTCCAACCATGGGGCTAGGCAACTTGATTATGTTCCAGCAACAATAAGCTGCCTGGAAGAGGAGTGTGTGTAGGTTGTAAAAGCTGCAAGAGGTCAAATTCCTGTGTTTCTTGATGGTGGAGTTCGCCGTGGCACAGATGTTTTCAAGGCACTGGCCCTTGGAGCCTCTGGTATTTTTATTGGAAGGCCTGTTGTCTATTCTTTGGCTGTAGAAGGAGAAGCGGGTGTAAGGAAAGTTTTACAAATGCTGCGGGATGAGCTTGAACTCACCATGTCTTTGGCTGGATGTTGTTCAGTAAAGGACATAAATCGCAGCTACATTCAAACGGAAACTGACATGTTTAGGGCTCTTTCAAGGCTCTGATCGGGTCTAATTCAATAGTTGTCTACGAACAAAATGCATATTAACATCCTAAGATAATCTGGATAAGATGTTTTTATTATTTGTTCTGCTAGTCAAAACCTGAAGCTTTGATCCCGAAAATTTACCCAC

Ace file of the UniGene sp_v2.0_unigene21893

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycolate oxidase n=1 Tax=Zantedeschia aethiopica RepID=Q84LB8_ZANAE	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	peroxisomal -2-hydroxy-acid oxidase 2	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	glycolate oxidase activity	GO:0008891	Molecular Function	87%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	87%
Blast2go	peroxisome	GO:0005777	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	membrane	GO:0016020	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	apoplast	GO:0048046	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	FMN-dependent dehydrogenase	IPR000262	-	-
Sma3	FMN-dependent alpha-hydroxy acid dehydrogenase, active site	IPR008259	-	-
Sma3	Alpha-hydroxy acid dehydrogenase, FMN-dependent	IPR012133	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3		IPR017934	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPP7

Fln msg: your sequence is shorter than subject: 146 - 367

Fln protein: NPCEGSNDAQDTRLAVQAGAAGIIVSNHGARQLDYVPATISCLEEECV*VVKAARGQIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAVEGEAGVRKVLQMLRDELELTMSLAGCCSVKDINRSYIQTETDMFRALSRL*

Protein Length: 147

Fln nts: CGAATCCTTGTGAAGGGAGCAATGACGCTCAGGACACCAGGCTAGCAGTACAAGCAGGTGCTGCAGGGATAATCGTGTCCAACCATGGGGCTAGGCAACTTGATTATGTTCCAGCAACAATAAGCTGCCTGGAAGAGGAGTGTGTGTAGGTTGTAAAAGCTGCAAGAGGTCAAATTCCTGTGTTTCTTGATGGTGGAGTTCGCCGTGGCACAGATGTTTTCAAGGCACTGGCCCTTGGAGCCTCTGGTATTTTTATTGGAAGGCCTGTTGTCTATTCTTTGGCTGTAGAAGGAGAAGCGGGTGTAAGGAAAGTTTTACAAATGCTGCGGGATGAGCTTGAACTCACCATGTCTTTGGCTGGATGTTGTTCAGTAAAGGACATAAATCGCAGCTACATTCAAACGGAAACTGACATGTTTAGGGCTCTTTCAAGGCTCTGA___TCGGGTCTAATTCAATAGTTGTCTACGAACAAAATGCATATTAACATCCTAAGATAATCTGGATAAGATGTTTTTATTATTTGTTCTGCTAGTCAAAACCTGAAGCTTTGATCCCGAAAATTTACCCAC

Fln Alignment:

Contig21893___EGSNDAQDTRLAVQAGAAGIIVSNHGARQLDYVPATISCLEEECV*VVKAARGQIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVYSLAVEGEAGVRKVLQMLRDELELTMSLAGCCSVKDINRSYIQTETDMFRALSRL
B8LPP7_______________KGVMTAEDTRLAVQAGVQGIIVSNHGARQLDYVPATISSLEE----VVKAAQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRNVLQMLRDEFELTMALAGCCSVKEINRNYIQTEADMIRSISRL

SNPs (tot: 3)

Position	C %	G %	T %	Probability
281	80	20		0.995493
282		20	80	0.995493
283		20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain