SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21875

Length: 1457 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21875

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase, putative n=2 Tax=rosids RepID=B9SRU2_RICCO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	feronia receptor-like kinase	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	81%
Blast2go	pollen tube reception	GO:0010483	Biological Process	81%
Blast2go	post-embryonic development	GO:0009791	Biological Process	81%
Blast2go	defense response to fungus	GO:0050832	Biological Process	81%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	81%
Blast2go	filiform apparatus	GO:0043680	Cellular Component	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 333 - 431

Fln protein: RRDLGCHSGCSEKRKSTF*TGYQ*ISD*DRVAFQASS*PWLSLIGYCEDNCEMILVYDYMAYGTLRGHLYKSDMPPLSWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKFVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPTLPREQVSLAEWALHCLKKGTLEHIIDPHLKGKINPESLQKFAETAEKCLADQGIDRPPMGDVLWNLEFTLQLQETAIENKMVDDSIADFAEAPLKFNCAKASPDHVTGSHSIGISIGGQSMTSESSDDVTPSMVFSQLVNPKGR*

Protein Length: 334

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTGCAGTGAAAAGAGGAAATCCACTTTCTGAACAGGGTATCAATGAATTTCAGACTGAGATAGAGTTGCTTTCCAAGCTTCGTCGTGACCTTGGCTGTCACTCATTGGTTACTGTGAAGATAATTGTGAGATGATTCTGGTCTATGATTACATGGCTTATGGTACACTGCGAGGCCACCTATACAAGAGTGACATGCCTCCTTTGTCCTGGAAGCAGAGACTAGAGATCTGTATTGGAGCTGCTCGCGGTCTGCATTATCTCCACACAGGGGCAAAGCACACCATCATTCACCGTGATGTAAAGACCACCAATATACTTCTGGATGAAAAGTTTGTTGCAAAAGTTTCAGATTTTGGCCTCTCCAAGACTGGCCCAACTCTGGATCACACTCATGTGAGCACTGTAGTGAAAGGCAGTTTTGGATACCTGGATCCAGAATATTTCCGTCGGCAGCAGCTCACTGAAAAGTCAGATGTTTATTCGTTTGGAGTTGTGTTATTTGAGGTGTTATGTGCACGACCTGCTCTTAATCCAACGCTTCCAAGAGAACAGGTAAGCCTTGCTGAATGGGCTCTGCACTGTCTGAAGAAGGGGACTTTGGAGCATATTATAGATCCTCATTTGAAAGGAAAAATAAACCCTGAATCCCTTCAAAAGTTTGCAGAGACAGCTGAAAAGTGTCTTGCTGATCAAGGAATTGATAGACCACCTATGGGAGATGTGCTTTGGAACTTAGAGTTCACTTTGCAACTTCAAGAAACTGCTATTGAAAATAAAATGGTCGATGACAGCATTGCAGACTTCGCTGAAGCACCACTGAAGTTTAACTGCGCAAAAGCTTCTCCAGATCATGTTACAGGCAGCCACAGCATAGGAATTAGCATTGGAGGTCAGAGTATGACAAGTGAGAGCTCAGATGATGTGACACCAAGTATGGTGTTTTCACAGCTAGTGAATCCCAAAGGGCGCTAG___TTTACCAGGTGGCTTACATCCCCTGGGAGTATTAGCTATAAAAAAATACAGGTATATTTGGCTTCTTGAGGTCCTTATTGTTGGGTCAAGTCTTCAATTTCATTTGTTTGTATCACACAGTTTAATGTTATCATTTAAGTACAAAGACACTCGCAACAATAGTTTGATGGGATTCATTTGTAATGTTCTCATACAACTTTATAGTTAGTTTGAACGCTTTGGCGTCCATATTCTAAGTAGGAATATTTCTTTATCAAGGATCAAAGGTTCTCTGAAGGATTAAGTCTTCTTTGTCCTAGGAAATAGACGGCCTTGCTGACCTGAAGTTCTGTTCGTAAACTATATGCATCATTGATACGATGCAGTTTCTCATTGTATCAGCCAATTCAATGACTATTCAGTATTAATGGGGACCTGGAAAGGCTCAATAAGTTATTTATTCTTCAATAAGACATCCA

Fln Alignment:

Contig21875___LSLIGYCEDNCEMILVYDYMAYGTLRGHLYKSDMPPLSWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKFVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPTLPREQVSLAEWAL-HCLKKGTLEHIIDPHLKGKINPESLQKFAETAEKCLADQGIDRPPMGDVLWNLEFTLQLQETA
B8LKY1_______________VKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTA

SNPs (tot: 89)

Position	A %	C %	G %	T %	Probability
109		16		83	0.994512
111	16		83		0.994512
116	16	83			0.994512
119			83	16	0.994512
121		83	16		0.994512
126	83			16	0.994512
317	88		11		0.923564
318		88		11	0.923564
325			88	11	0.923564
326			11	88	0.923564
327	88		11		0.923564
328	88	11			0.923564
329	88			11	0.923564
331	88			11	0.923564
334	88			11	0.923564
336	11	88			0.923564
344			11	88	0.923564
347			11	88	0.923564
348			88	11	0.923564
351		11		88	0.923564
352		11	88		0.923564
353	87			12	0.992554
354	87			12	0.992554
355	87		12		0.992554
356	87		12		0.992554
357		12	87		0.992554
360		12		87	0.992554
361	12		87		0.992554
362		12		87	0.992554
364		12	87		0.992554
365	12	87			0.992554
445		10		90	0.90298
446			10	90	0.90298
448		10	90		0.90298
450	90			10	0.90298
451			10	90	0.90298
458	90	10			0.90298
460		90		10	0.90298
464	88	11			0.923564
465	88			11	0.923564
466		12		87	0.992554
547		85	14		0.993533
564	33		66		1.0
605	85	14			0.993533
606		85		14	0.993533
609			14	85	0.993533
613	83			16	0.994512
614	83	16			0.994512
615	16		83		0.994512
616	83	16			0.994512
617	83			16	0.994512
618		16	83		0.994512
619	16		83		0.994512
792	33			66	0.997452
878	80		20		0.995493
882			20	80	0.995493
885	80			20	0.995493
889	80			20	0.995493
891		80		20	0.995493
950			71	28	1.0
952		12		87	0.992554
954	62			37	1.0
956	87		12		0.992554
957		87		12	0.992554
958		62	12	25	1.0
959	75	25			1.0
960	87	12			0.992554
961		12	62		1.0
970	14			85	0.993533
971		14		85	0.993533
990	87		12		0.992554
991	87			12	0.992554
992	87	12			0.992554
994			87	12	0.992554
996	12	87			0.992554
997		12	87		0.992554
1000	87			12	0.992554
1004		12		87	0.992554
1071		6	80	13	0.999961
1077		13	6	80	0.999961
1080		12		87	0.999964
1085		15	78	5	1.0
1089	73	5	15		1.0
1090	78			21	1.0
1092	15		5	78	1.0
1096		84	15		1.0
1097	84		15		1.0
1098	78	21			1.0
1100	5		15	78	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain