SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21863

Length: 542 nt

Origin of reads: Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene21863
TAGGCAATCTGTCTATATTTTCATACGAAGAACTTCGACGGGCTACAAATTTCTTCCATGAGGAGAACGAAATTGGGGATGGAGGGTTCGGCTCGGTGTATCTGGGAAAACTTAGGGACGAACAGACTGTGGCGGTAAAGAGACTTTATCAGGACGGGTCTAGGACAGTTGCACAGTTCATCAATGAGGTGGCCATATTTTCGTCCTTGAATCATCCACATCTCGTTCGACTCTATGGTTGCACAACTGCAGAGAGTCCGGAGCTGCTGCTCGTCTACGAATTTGTACCAAATGGGAGTTTGGAAAATCATCTTCACGGCGATCGCAAAGGACCCGGGGGACTATCATGGAATACCCGTTTGAACATTGCTCTTCAAACAGCCCAGGCCTTGGCTTTCCTTCACAACTTTAATCCACCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTCAATGTCAAAGTGGCTGATTTTGGGCTTTGCAGGCATGTGCCTGTAAATGCCTCACATGTCACCACAACCCCT

Ace file of the UniGene sp_v2.0_unigene21863 (antisense)

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os01g0689900 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q5N7Q8_ORYSJ	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	EGF-type aspartate/asparagine hydroxylation site	IPR000152	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	Peptidyl-prolyl cis-trans isomerase, FKBP-type, domain	IPR001179	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	EGF-like calcium-binding	IPR001881	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	EGF-like domain	IPR006209	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013091	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	EGF-like calcium-binding, conserved site	IPR018097	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 235 aas, your sequence is shorter than subject: 180 - 656

Fln protein: GNLSIFSYEELRRATNFFHEENEIGDGGFGSVYLGKLRDEQTVAVKRLYQDGSRTVAQFINEVAIFSSLNHPHLVRLYGCTTAESPELLLVYEFVPNGSLENHLHGDRKGPGGLSWNTRLNIALQTAQALAFLHNFNPPIFHRDVKSSNILLDENFNVKVADFGLCRHVPVNASHVTTTP

Protein Length: 181

Fln nts: TAGGCAATCTGTCTATATTTTCATACGAAGAACTTCGACGGGCTACAAATTTCTTCCATGAGGAGAACGAAATTGGGGATGGAGGGTTCGGCTCGGTGTATCTGGGAAAACTTAGGGACGAACAGACTGTGGCGGTAAAGAGACTTTATCAGGACGGGTCTAGGACAGTTGCACAGTTCATCAATGAGGTGGCCATATTTTCGTCCTTGAATCATCCACATCTCGTTCGACTCTATGGTTGCACAACTGCAGAGAGTCCGGAGCTGCTGCTCGTCTACGAATTTGTACCAAATGGGAGTTTGGAAAATCATCTTCACGGCGATCGCAAAGGACCCGGGGGACTATCATGGAATACCCGTTTGAACATTGCTCTTCAAACAGCCCAGGCCTTGGCTTTCCTTCACAACTTTAATCCACCTATATTCCACAGAGATGTGAAATCCTCTAATATTCTCTTGGACGAGAATTTCAATGTCAAAGTGGCTGATTTTGGGCTTTGCAGGCATGTGCCTGTAAATGCCTCACATGTCACCACAACCCCT

Fln Alignment:

Contig21863___FSYEELRRATNFFHEENEIGDGGFGSVYLGKLRDEQTVAVKRLYQDGSRTVAQFINEVAIFSSLNHPHLVRLYGCTTAESPELLLVYEFVPNGSLENHLHGDRKGPGGLSWNTRLNIALQTAQALAFLH-NFNPPIFHRDVKSSNILLDENFNVKVADFGLCRHVPVNASHVTT
C0PRI9_______________FTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGS-QRLLVYEFVPNDTLEHHLHG--KGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVST

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
184	57		42		1.0
206		57		42	1.0
217	37		62		1.0
245		57		42	1.0
259	80		20		0.995493
297	40			60	1.0
310	50		50		1.0
313	50			50	1.0
358	60		40		1.0
370		40		60	1.0
438		75		25	0.996473
491	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain