SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21861

Length: 318 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene21861
CGTCGTGACCTTGGCTGTCACTCAATTTCTCCATCGCTGGGCAATTCGTCGTGACCTTGGCTGTCACTCATTCTCAGAGGCAATGAGCTCACTGGTCATATCCCGCCTCAATTGGGACGCCTCTTTCGTTTGACGGATCTCGAGTTGGACAACAATGGCTTGGACGGAGATATCCCAACTCAACTCTGCAGTTGCAGAAATTTGGTTGTTCTGGCGCTCTCCTCTAACAACCTGACCGGAAATATCCCGCGCGAGTTGGGTTCCCTTCCGCTTTTGCAAGTGCTTTACTTGGGAGAGAACAAGCTGACAGGTTCCATT

Ace file of the UniGene sp_v2.0_unigene21861

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat resistance protein-like protein n=1 Tax=Gossypium hirsutum RepID=Q93X72_GOSHI	-	-	5.0e-08	38%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	receptor protein kinase	-	-	1.35253e-09	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Guanine-nucleotide dissociation stimulator CDC25	IPR001895	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Domain of unknown function DUF1618	IPR011676	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Pyruvate kinase, active site	IPR018209	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRW5

Fln msg: Distance to subject end: 401 aas, your sequence is shorter than subject: 106 - 551

Fln protein: RRDLGCHSISPSLGNSS*PWLSLILRGNELTGHIPPQLGRLFRLTDLELDNNGLDGDIPTQLCSCRNLVVLALSSNNLTGNIPRELGSLPLLQVLYLGENKLTGSI

Protein Length: 107

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTCCATCGCTGGGCAATTCGTCGTGACCTTGGCTGTCACTCATTCTCAGAGGCAATGAGCTCACTGGTCATATCCCGCCTCAATTGGGACGCCTCTTTCGTTTGACGGATCTCGAGTTGGACAACAATGGCTTGGACGGAGATATCCCAACTCAACTCTGCAGTTGCAGAAATTTGGTTGTTCTGGCGCTCTCCTCTAACAACCTGACCGGAAATATCCCGCGCGAGTTGGGTTCCCTTCCGCTTTTGCAAGTGCTTTACTTGGGAGAGAACAAGCTGACAGGTTCCATT

Fln Alignment:

Contig21861___ISPSLGNSS*PWLSLI-LRGNELTGHIPPQLGRLFRXXXXXXXXXXXXXXIPTQLCSCRXXXXXXXXXXXX-TGNIPRELGSLPLLQVLYLGENKLTGSI
B8LRW5_______________ISPLLANLS--FLRVLDLSNNSHHGYIPHDLGRLFRLRVLRLSRNRLECPIPSTICGCRLLKIISLSNNFLLNGSIPSELGLLRNLKFLWLGINKLTGSI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
47		75		25	0.996473
54	75			25	0.996473
55		75		25	0.996473
60		25	75		0.996473
63			75	25	0.996473
64	25			75	0.996473
66	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain