SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21824

Length: 1684 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21824

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9T738_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	amino acid transporter	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sodium:dicarboxylate symporter	IPR001991	-	0.0	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg:

Fln protein: MTIVASPERKPRKQKPLLSETSPLLPEKQQDDEYGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLVLGSLLIIFVCFLTDASIDILLRFSRAGAAVSYGGVMGEAFGRIGKMLLQICVVISTLGILIVYMIIIGDVLSGTSSNGVHHAGILEELFGFHWWNGRLPILVLTIVLILAPLVSFKRVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTVQAPRLLPDIVDHTSFLKLFTVVPVIVTAYICHFNVHPIYNELEDPSEMQPIVRTSLALCSIVYIATSFFGVLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRMTYVVHLMLVFPLVFFALRLNIDGLIFPAKKPLLSDNKRFILVTTVLIGTIFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTKKDICLSLFMIFLAVVSSSIAIFSDINSMFKENEVGPPRS*

Protein Length: 465

Fln nts: GTATTGTCTAAACA_-_ATGACAATTGTGGCCTCTCCGGAGAGGAAACCCCGGAAGCAGAAGCCTTTGTTGAGTGAAACCAGTCCCCTGCTGCCCGAGAAGCAACAGGATGACGAATATGGTGTCCATGAAGGATTCAATGGCGCCTCCTTCTCCGGCGCTGTGTTCAATTTGTCGACTACGGTGGTAGGAGCGGGAATTATGGCTCTGCCTGCTACTATGAAGGTCTTGGGATTGGTTCTCGGCAGTCTACTCATTATCTTCGTTTGCTTCTTGACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGGGCCGGGGCAGCGGTTTCCTATGGCGGCGTCATGGGAGAGGCCTTCGGTAGAATTGGGAAGATGCTGTTGCAGATCTGTGTTGTTATTAGCACTCTGGGCATTCTTATTGTGTATATGATTATCATAGGTGATGTGCTATCTGGAACATCATCAAATGGTGTGCATCATGCTGGTATACTTGAAGAATTGTTTGGATTTCATTGGTGGAATGGACGTCTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGTGTCTTTCAAGAGAGTGGATTCTTTGAAATTCACTTCTGCATTATCAGTTGCACTCGCTGTTGTATTTGTTGTGATCACGGCTGGTATTGCGATTGTAAAGTTGTTCAGTGGCACCGTCCAGGCGCCAAGATTGTTACCGGATATTGTTGATCATACTTCGTTCCTGAAGCTTTTCACTGTGGTACCAGTCATTGTGACTGCTTACATTTGTCATTTCAATGTTCATCCCATATACAATGAACTTGAGGATCCTTCAGAAATGCAACCCATTGTTCGCACATCATTGGCATTGTGCTCAATTGTATACATAGCTACAAGCTTTTTTGGTGTTCTTCTATTTGGAGACCAGACTATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCTTACAGTGCTGTGCTGAATGACATTGTTCGCATGACCTACGTTGTACATCTGATGCTGGTCTTTCCTCTCGTATTTTTTGCCCTGCGACTTAATATTGATGGGCTTATCTTTCCAGCCAAAAAGCCCCTTCTTTCGGATAATAAAAGGTTCATCTTGGTCACTACCGTGTTAATTGGAACCATTTTCCTCGGGGCATCATTCATACCCAGTATCTGGGATGCATTTCAGTTCACAGGGGCTACTGCAGCAGTTTGTATTGGGTTCATCTTCCCAGCTTCCATTGCTCTCAGAGATACACATGGAATCTCAACGAAAAAGGATATCTGTCTCTCACTGTTTATGATATTTCTTGCCGTAGTTTCAAGTTCAATTGCAATATTCAGCGACATAAATTCTATGTTCAAGGAAAATGAGGTAGGCCCTCCACGATCTTGA___GGATGGTGTTACTTATCAAAAGAAGCAACGCCTGCATATAAATATAAGGATTTTTGGAGCAGAACAAAGAACAGAAAACTGATCTGGAACCTGATTGTAGAATTGTGAAAGGTGGATAAACTATTGTAAAGCCATTGTAAAGGCATGGATCAGCTAATGATCCGGTGGATCAGCTAGTTTTAAAATATTCACTTGTGTGGAAGGCGAATTGCCAGTGAAGCTAAATAGTCATTAGTCATGAAAAATCCAGGAGACTATTTGGAACAGGTCATTAAATT

Fln Alignment:

Contig21824___MTIVASPERKPRKQKXXXXXXXXXXXXKQQDDEYGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKXXXXXXXXXXXXFVCFLTDASIDILLRFSRAGAAVSYGGVMGEAFGRIGKMLLQICVVISTLGILIVYMIIIGDVLSGTSSNGVHHAGILEELFGFHWWNGRXXXXXXXXXXXXXXXXSFKRVDSLKXXXXXXXXXXXXXXXXXXGIAIVKLFSGTVQAPRLLPDIVDHTSFLKLFTVVPVIVTAYICHFNVHPIYNELEDPSEMQPIVRTSLALCSIVYIATSFFGVLLFGDQTMDDVLANFDTNLGVPYSAVLNDIVRMTYVVHLMLVFPLVFFALRLNIDGLIFPAKKPLLSDNKRFILVTTVLIGTIFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTKKDICLSLFMIFLAVVSSSIAIFSDINSMFKEN
D5ACG6_______________MTIVASPERRSRKQKPLVSESSPLLPEKHQDGEDCVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLVLGILLIIFVGLLTDASIDILLRFSRAGAAASYGGVMGDAFGRIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGLHHAGILEEWFGFHWWNGRVQILLLTTVLILAPLVSFKKVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTIQMPRLLPDIVDHTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYITTSFFGFLLFGDQTMDDILANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLIFPAKKHLVLDNKRFILITAGLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTNGISTKKDIYLSLFMIFLAVVSSSIAIFSDINSMFKKN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1214			14	85	0.993533
1215	85			14	0.993533
1221		14	85		0.993533
1223	42			57	1.0
1225			14	85	0.993533
1226		14		85	0.993533
1231		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain