SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21818

Length: 1977 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

>sp_v2.0_unigene21818
ATGGGGAACCGTGTTGTGCAAAGTTCCAAGAGGGCATGTTCCATTATGAGTTTTGATAAGTTGCTTCAGGCTTTGCCTCTGCCTCTGCCTGCAATATTAATAGCCACTTTCATATTCTTCTTCTCCTGCTGGATATTGCACCAGAGTCGAAGGAATGAGAGATTGCCTCCTGGACCCTATCCATGGCCAATCATCGGCAATTTCCACCAAGTGAGACTTCCTCTTCACCGTACTCTCAAAAACCTTGCTGAGAAATATGGTCCCATTTTGTTTCTGCGCTTTGGCTCTGTACCCACTGTGGTTGTTTCTTCATCTGAGATGGCCAAACACTTTCTTAAAACTCATGATTTGAGATTTGCCAGCCGACCTCTAACATCGGTAGGAAAATATTTCTTCTATAACTTCAAAGATATTGCCTTCAGTCCTTATGGAGATCACTGGAGGAAAATGAGAAAAATATGCGTGTTAGAACTGCTCACTGTCAAAAGAATCGAGTCCTTCAAGCATGTGCGACAGGAGGAACTGTCTGCGATGATCCATTCCATTTGGGAAGAGAGTGAGAGCGGCAGGATTGCCGTGAATGTGAGCAAGGCCATCTCTACTTCTCTAGCGAATATACTTTGGCGAATACTGGCGAGGAAGAAATTTTCCGACAATGACTTGGGGGCCGATGGCAAAGGGTTCGCGGATCTGGTGGTCGAGGTGTCCATTGCGGTCGGAAGTTTAAACCTTGGAGACTTCATTCCTTATTTGGGTTGCCTTGATTTGCAAGGTATCAAGCGGGCCCTAAAGAAGGCCAACGCAAGATTTGATGCATTCGCTGAGAAAATAATAGATGAACATATTAATGCCTCCACCATCAGAAATGGTGAGGCAGATGCAGAGTGTCATGTTAAAGATATCATCGATGTGCTCCTTGAGATGGCCAAGAACGATAATACGGAGGCAAAAGTTACACGTGAAATAATCAAGGCAATTACATATGAGTTGTTTTCTGCTGGAATGGAGACATCGGCAAACGTGTTAGAATGGACCATGAGTGAGCTGCTAAGACATCCTCATGCAATGAAGAAATTGCAGCAAGAAATCGAATCCGTCGTTGGCCAACAAGGTATAGTAAAGGAGTCGGATCTGGCAAGCATGGTATACCTCCATTGTGTCGTGAAAGAGACCCTACGGCTATACCCATCGTTGCCGCTAGCGCTTCCCCACGAGTCTGTAGAGGCTGTCACAGTTGGGGGGTACTATATACCAAAGAAAACAATGGTAATCATGAACTTGTGGGCTATAGGAAGGGATCCCAGTGTGTGGGGCGCAGATGCTTCCGAATTCAAGCCGGAGAGATTTATGCAGATGGAAGAAAATGTTATGGATTTATCCGGAGGTCAATCAGACTTCAGGATGCTTCCATTTGGGGCGGGAAGAAGAAGATGCCCAGGATCTGCCATGGCTATTCTGACGGTTGAGTTTACGTTGGCTCAGTTGTTGCACACTTTCGACTGGAGAGTAGAAGGCGATCCATCAGAGCTGGATATGAAGGAAGCATGTGCAACCACGATGCCAAGACAAACTCCGCTGCTTGCTTATCCAAGTTTGAGGCTGCCTCGTTGTCCTTAGAAATCCGTAAACTATCTATCTATGTACGCAGGGTAGGGAAAGCTTTTCACAAAGTATATCTATAATAAGCGTGAAAGCTGAACATCCACTATGGGGAGTGATGGTAGACTGCTATTTTCTGTTTCACTTGCTAAATTCGTAGTTATGCCTACAAATCTGTAATAGTTAAAAATATTAGATAGATTCCAGTTGTTGGGCTGCTCTTTTCATTATGAGAAGATGTAGAGCACGCTACCTGACATGTAACTGTTCTGGCAGGCTCGCCAGTCAAAGCTTTACATCGGATCATCGCTGGCCAGTCTAAACAGGCACCTAGATTGTAATAGTTTTATTCAGAATTGAATCGTTTTGCTTAAGTTT

Ace file of the UniGene sp_v2.0_unigene21818

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 750A1 n=1 Tax=Pinus taeda RepID=C75A1_PINTA	-	-	96%
FL-Next	sp=Cytochrome P450 750A1; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	cytochrome p450 monooxygenase cyp736b	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q50EK4

Fln msg:

Fln protein: MGNRVVQSSKRACSIMSFDKLLQALPLPLPAILIATFIFFFSCWILHQSRRNERLPPGPYPWPIIGNFHQVRLPLHRTLKNLAEKYGPILFLRFGSVPTVVVSSSEMAKHFLKTHDLRFASRPLTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTVKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSKAISTSLANILWRILARKKFSDNDLGADGKGFADLVVEVSIAVGSLNLGDFIPYLGCLDLQGIKRALKKANARFDAFAEKIIDEHINASTIRNGEADAECHVKDIIDVLLEMAKNDNTEAKVTREIIKAITYELFSAGMETSANVLEWTMSELLRHPHAMKKLQQEIESVVGQQGIVKESDLASMVYLHCVVKETLRLYPSLPLALPHESVEAVTVGGYYIPKKTMVIMNLWAIGRDPSVWGADASEFKPERFMQMEENVMDLSGGQSDFRMLPFGAGRRRCPGSAMAILTVEFTLAQLLHTFDWRVEGDPSELDMKEACATTMPRQTPLLAYPSLRLPRCP*

Protein Length: 540

Fln nts: _-_ATGGGGAACCGTGTTGTGCAAAGTTCCAAGAGGGCATGTTCCATTATGAGTTTTGATAAGTTGCTTCAGGCTTTGCCTCTGCCTCTGCCTGCAATATTAATAGCCACTTTCATATTCTTCTTCTCCTGCTGGATATTGCACCAGAGTCGAAGGAATGAGAGATTGCCTCCTGGACCCTATCCATGGCCAATCATCGGCAATTTCCACCAAGTGAGACTTCCTCTTCACCGTACTCTCAAAAACCTTGCTGAGAAATATGGTCCCATTTTGTTTCTGCGCTTTGGCTCTGTACCCACTGTGGTTGTTTCTTCATCTGAGATGGCCAAACACTTTCTTAAAACTCATGATTTGAGATTTGCCAGCCGACCTCTAACATCGGTAGGAAAATATTTCTTCTATAACTTCAAAGATATTGCCTTCAGTCCTTATGGAGATCACTGGAGGAAAATGAGAAAAATATGCGTGTTAGAACTGCTCACTGTCAAAAGAATCGAGTCCTTCAAGCATGTGCGACAGGAGGAACTGTCTGCGATGATCCATTCCATTTGGGAAGAGAGTGAGAGCGGCAGGATTGCCGTGAATGTGAGCAAGGCCATCTCTACTTCTCTAGCGAATATACTTTGGCGAATACTGGCGAGGAAGAAATTTTCCGACAATGACTTGGGGGCCGATGGCAAAGGGTTCGCGGATCTGGTGGTCGAGGTGTCCATTGCGGTCGGAAGTTTAAACCTTGGAGACTTCATTCCTTATTTGGGTTGCCTTGATTTGCAAGGTATCAAGCGGGCCCTAAAGAAGGCCAACGCAAGATTTGATGCATTCGCTGAGAAAATAATAGATGAACATATTAATGCCTCCACCATCAGAAATGGTGAGGCAGATGCAGAGTGTCATGTTAAAGATATCATCGATGTGCTCCTTGAGATGGCCAAGAACGATAATACGGAGGCAAAAGTTACACGTGAAATAATCAAGGCAATTACATATGAGTTGTTTTCTGCTGGAATGGAGACATCGGCAAACGTGTTAGAATGGACCATGAGTGAGCTGCTAAGACATCCTCATGCAATGAAGAAATTGCAGCAAGAAATCGAATCCGTCGTTGGCCAACAAGGTATAGTAAAGGAGTCGGATCTGGCAAGCATGGTATACCTCCATTGTGTCGTGAAAGAGACCCTACGGCTATACCCATCGTTGCCGCTAGCGCTTCCCCACGAGTCTGTAGAGGCTGTCACAGTTGGGGGGTACTATATACCAAAGAAAACAATGGTAATCATGAACTTGTGGGCTATAGGAAGGGATCCCAGTGTGTGGGGCGCAGATGCTTCCGAATTCAAGCCGGAGAGATTTATGCAGATGGAAGAAAATGTTATGGATTTATCCGGAGGTCAATCAGACTTCAGGATGCTTCCATTTGGGGCGGGAAGAAGAAGATGCCCAGGATCTGCCATGGCTATTCTGACGGTTGAGTTTACGTTGGCTCAGTTGTTGCACACTTTCGACTGGAGAGTAGAAGGCGATCCATCAGAGCTGGATATGAAGGAAGCATGTGCAACCACGATGCCAAGACAAACTCCGCTGCTTGCTTATCCAAGTTTGAGGCTGCCTCGTTGTCCTTAG___AAATCCGTAAACTATCTATCTATGTACGCAGGGTAGGGAAAGCTTTTCACAAAGTATATCTATAATAAGCGTGAAAGCTGAACATCCACTATGGGGAGTGATGGTAGACTGCTATTTTCTGTTTCACTTGCTAAATTCGTAGTTATGCCTACAAATCTGTAATAGTTAAAAATATTAGATAGATTCCAGTTGTTGGGCTGCTCTTTTCATTATGAGAAGATGTAGAGCACGCTACCTGACATGTAACTGTTCTGGCAGGCTCGCCAGTCAAAGCTTTACATCGGATCATCGCTGGCCAGTCTAAACAGGCACCTAGATTGTAATAGTTTTATTCAGAATTGAATCGTTTTGCTTAAGTTT

Fln Alignment:

Contig21818___TFIFFFSCWILHQSRRNERLPPGPYPWPIIGNFHQVRLPLHRTLKNLAEKYGPILFLRFGSVPTVVVSSSEMAKHFLKTHDLRFASRPLTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTVKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSKAISTSLANILWRILARKKFSDNDLGADGKGFADLVVEVSIAVGSLNLGDFIPYLGCLDLQGIKRALKKANARFDAFAEKIIDEHINASTIRNGEADAECHVKDIIDVLLEMAKNDNTEAKVTREIIKAITYELFSAGMETSANVLEWTMSELLRHPHAMKKLQQEIESVVGQQGIVKESDLASMVYLHCVVKETLRLYPSLPLALPHESVEAVTVGGYYIPKKTMVIMNLWAIGRDPSVWGADASEFKPERFMQMEENVMDLSGGQSDFRMLPFGAGRRRCPGSAMAILTVEFTLAQLLHTFDWRVEGDPSELDMKEACATTMPRQTPLLAYPSLRLPRCP
Q50EK4_______________TFIFFFSCWILHQSQRNERLPPGPYPWPIIGNFHQVRLPLHRTLKNLAEKYGPILFLRFGSVPTVVVSSSEKAKHFLKTHDLIFASRPPTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTSKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSKAISTSLANILWRILARKKFSDNDLGADGKGFADLVVEVSIAVGSLNIGDFIPYLDCLDLQGIKRALKKANARFDAFAEKMIDEHINASTIRNGEADAGCHVKDIIDVLLEMAKNDNTGAKVTREIIKAITYELFSAGMETSANVLEWAMSELLRHPHAMKKLQQEIESVVGQQGTVKESDLASIVYLHCVVKETLRLYPSLPLALPHESLEAVTVGGYYIPKKTMVIMNLWAIGRDPSVWGADASEFKPERFMQMEENGIDLSGGQSDFRMLPFGAGRRTCPGSAMAILTVEFTLAQLLHTFDWRVEGDPSELDMKEACATKMPRQTPLLAYPRLRLPRCP

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
72		66		33	1.0
89		83	16		0.994512
101	83	16			0.994512
112	14	85			0.993533
115	85		14		0.993533
126		85		14	0.993533
129			57	42	1.0
141	90	10			0.90298
146	60		40		1.0
162	40		60		1.0
180	60		40		1.0
196		80		20	0.999996
210	10	90			0.90298
213			60	40	1.0
240	87		12		0.992554
245		71		28	1.0
479		33	66		1.0
566		33		66	1.0
604		50		50	1.0
617		50		50	1.0
698		60	40		1.0
717		60	40		1.0
720	60		40		1.0
780	75		25		0.996473
817		40		60	1.0
833	40		60		1.0
834	40		60		1.0
872			12	87	0.992554
911		11		88	0.923564
934	88			11	0.923564
1018		88		11	0.923564
1035	80		20		0.999996
1037	10	90			0.90298
1038	83			16	0.999991
1091		12		87	0.992554
1099		12		87	0.992554
1104	14		85		0.993533
1105		14	85		0.993533
1106	14	85			0.993533
1107		85		14	0.993533
1108	85			14	0.993533
1126	83		16		0.994512
1268	25		75		0.996473
1269		25	75		0.996473
1272	75			25	0.996473
1316		33		66	1.0
1331	75			25	1.0
1369			14	85	0.993533
1516	10		90		0.90298
1519	90			10	0.90298
1563	12	87			0.992554
1566	87			12	0.992554
1567			87	12	0.992554
1600	83		16		0.994512
1709	12			87	0.992554
1830		18		81	0.999994
1890	78		21		1.0
1930	30		69		1.0
1932	23	76			1.0
1957	42		57		1.0
1965		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain