SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21702

Length: 1884 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21702

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glycine-rich protein n=1 Tax=Medicago truncatula RepID=A9YWR4_MEDTR	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	uncharacterized protein	-	-	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Protein of unknown function DUF1399	IPR009836	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LME0

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 568 - 815

Fln protein: MNAVQEEEWRKAQEISFSVDLDLISAAKQHLLFLASVDRYRCLYHGPALQRAIYRYEQCWLPLLAEHTESGNANFRLVVPLDCEWIWHCHRLNPVQYGKDCKKIYGRILDASFVESFITEADRKQTQDIWKYSYPEEPYELDLSHSVPGNSAGTIFKSMYNIEYDLTDAVRRQSSFFHQVSRPYMSDERFLKGAEERYKGFLYLIKKNRDNSVNCFCVPTYDVDLMWHSHQLQPVAYRRDMLNLLGKVLEHDDMDSDRSQGKKLDVGFTETTRQWETTYGRRYWRAGAMHKGDAPSPVPGPPLSSENSNCVGEPLFQSNQDNYLTPVKIVEVLLEVVGIRNIPEDHKGTLFVRYHKHNCPEMEAKEVEITSESQCKQIASFMCEATGDFIFELRSRSSRTVKRTSNGLGRVSIPLQTLLDSTTLSVENWFPLSRNGQRGDSKPISLHIAVSVTPPTTAPYLLWCVRSHCFERKLQFLECIRRIKRAETVMRFLDNHDKEIFTVKTRTTTKPYTSSFLESEEVCLQGLPDKRRILTVYRRNPSSKKLISSVEIVANAEELITVGGTARW

Protein Length: 569

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTACATGTTCCGATATCGAAGAGGCGCTTTAGGTTTAGATTGAAGAAGGAATGGAGGATTTGTAAGAAAACAGATCAAGGTTTGAAGGAGTTTGAAGGAGTGGAGGAGTTTTGATAACCAAGATTTAAGGTTGGAAAGGTTTTTTTGAGAAGG_-_ATGAATGCAGTGCAGGAAGAGGAATGGCGAAAAGCACAAGAGATTAGCTTCAGCGTGGATCTGGATCTGATCAGTGCGGCAAAACAGCATCTACTGTTTCTTGCTTCCGTCGATCGGTATCGATGCCTTTACCATGGACCAGCTTTACAGAGAGCCATTTACAGGTACGAGCAGTGCTGGCTTCCATTGCTTGCTGAGCACACAGAATCCGGCAATGCAAATTTTCGGCTTGTTGTTCCTCTCGACTGTGAATGGATCTGGCACTGTCACAGGCTCAATCCAGTCCAATACGGAAAGGATTGCAAGAAAATATATGGCAGAATACTGGATGCTTCTTTCGTGGAGTCATTTATCACAGAAGCTGACAGAAAACAGACACAGGATATATGGAAATACTCTTACCCGGAAGAACCATATGAGCTTGATTTGAGTCATTCCGTTCCAGGGAACTCTGCTGGAACGATTTTTAAAAGTATGTATAACATCGAGTATGATCTTACTGACGCAGTCCGGAGGCAAAGCTCATTCTTTCACCAGGTGTCCCGACCATACATGTCCGATGAACGGTTCCTTAAAGGAGCGGAAGAAAGATACAAGGGGTTTCTATACCTTATCAAGAAAAACAGGGACAATTCTGTCAACTGCTTCTGTGTTCCAACCTATGACGTTGATTTGATGTGGCATTCCCACCAGCTGCAGCCGGTTGCTTACAGGAGAGACATGTTAAATTTGCTCGGCAAAGTACTGGAACACGATGACATGGATTCTGACAGAAGCCAGGGTAAGAAACTCGATGTTGGATTTACAGAAACAACAAGACAATGGGAAACCACTTATGGCAGGCGCTACTGGAGAGCTGGGGCTATGCACAAAGGAGACGCACCCTCGCCCGTGCCCGGTCCTCCACTTTCATCGGAGAATTCTAATTGTGTAGGTGAACCTCTGTTTCAGTCTAATCAAGACAACTATCTGACTCCAGTAAAGATTGTGGAGGTGCTTTTGGAAGTGGTAGGTATCAGAAACATACCTGAAGACCACAAAGGTACTCTATTTGTCAGATATCACAAGCATAACTGTCCTGAAATGGAGGCAAAAGAGGTAGAAATAACCTCTGAATCTCAATGCAAACAAATCGCTTCTTTCATGTGTGAAGCCACTGGAGATTTTATCTTTGAGCTCAGATCTCGGTCTTCTCGCACAGTAAAAAGGACTAGCAACGGTCTGGGCCGAGTATCGATTCCACTCCAGACTTTGTTGGATTCAACAACCTTATCAGTTGAGAATTGGTTTCCGTTGTCAAGAAACGGGCAAAGAGGTGATTCCAAGCCTATCAGCTTGCACATTGCAGTTTCTGTAACTCCTCCCACAACTGCTCCTTATTTGCTCTGGTGTGTTAGGTCACACTGCTTTGAAAGGAAACTCCAATTTCTGGAATGTATCCGTAGAATTAAGCGAGCAGAAACAGTGATGAGATTTTTGGACAATCATGATAAAGAAATTTTCACTGTTAAAACAAGAACAACGACAAAACCATATACAAGCTCCTTCCTTGAATCTGAAGAGGTATGTTTGCAAGGCTTACCTGACAAGAGGCGTATTCTCACTGTTTATCGAAGAAATCCAAGTTCGAAGAAGTTGATATCTTCGGTTGAAATTGTGGCAAATGCCGAGGAGTTGATTACAGTAGGGGGAACTGCACGATGGGC

Fln Alignment:

Contig21702___MNAVQEEEWRKAQEISFSVDLDLISAAKQHLLFLASVDRYRCLYHGPALQRAIYRYEQCWLPLLAEHTESGNANFRLVVPLDCEWIWHCHRLNPVQYGKDCKKIYGRILDASFVESFITEADRKQTQDIWKYSYPEEPYELDLSHSVPGNSAGTIFKSMYNIEYDLTDAVRRQSSFFHQVSRPYMSDERFLKGAEERYKGFLYLIKKNRDNSVNCFCVPTYDVDLMWHSHQLQPVAYRRDMLNLLGKVLEHDDMDSDRSQGKKLDVGFTETTRQWETTYGRRYWRAGAMHKGDAPSPVPGPPLSSENSNCVGEPLFQSNQDNYLTPVKIVEVLLEVVGIRNIPEDHKGTLFVRYHKHNCPEMEAKEVEITSESQCKQIASFMCEATGDFIFELXXXXXXXXXXXXNGLGRVSIPLQTLLDSTTLSVENWFPLSRNGQRGDSKPISLHIAVSVTPPTTAPYLLWCVRSHCFERKLQFLECIRRIKRAETVMRFLDNHDXXXXXXXXXXXXXXXXSSFLESEEVCLQGLPDKRRILTVYRRNPSSKKLISSVEIVANAEELITVGGTARW
B8LME0_______________MNAVQEEEWRKAQEISISVDLDLISAAKQHLLFLASVDRYRCLYDGPALQRAIYRYEQCWLPLLAEHTESGNAKFQLVVPLDCEWIWHCHRLNPVQYGKDCNKIYGRILDASFVESSIKEADRKQTEEIWKYSYPEEPYELGLSHSVSGNSAGMIFKSMHKIEYDLTDAVRRQSSFFHQVSRPYMFDDRFLKGAEERYKGFLYLIKKNKDSSVNCFCVPTYDVDLMWHSHQLQPVAYTRDMLNLLGKVLEHDDMDSDRSQGKKLDVGFTETTRQWENTYGRRYSRAGAMHKGDAPSPVPSAPLSSENSDCVGKPLFQSNQDNYLTPVKIVEVLLEVVGIRNIPEDHKGTLFVRYHKDNCPGMEAKEVEITSESQCKQIASFQCEAIGDFIFELRSRSSRTVKRTSNSLGQVSIPLQTLLDSTTLSVENWFPLSRNGQPGGFKPISLHIAVSVTPPTIAPYLLWSVRSHCFERKFQFLECIRRIKRAEMVMRFVDHDDKEVFIVKTRTTAKPYTSSFLRSEEVSLRGLPDKRQIVTVYQRNPNSKKLISSGETVANAEELITIGGTAKW

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
911	83	16			0.999991
915			16	83	0.999991
916	83		16		0.999991
917	83	16			0.999991
918	83			16	0.999991
919			16	83	0.999991
921		16		83	0.999991
922	16		83		0.999991
1379	50		50		1.0
1387	25		75		0.996473
1395	66		33		0.997452
1469	66			33	0.997452
1506	66			33	0.997452
1507	66			33	0.997452
1617	75	25			0.996473
1619		75		25	0.996473
1686	80		20		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain