SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21686

Length: 960 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21686

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Quinone oxidoreductase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q8LDI4_ARATH	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	2-alkenal reductase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	82%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	82%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	82%
Blast2go	plasma membrane	GO:0005886	Cellular Component	82%
Blast2go	nucleus	GO:0005634	Cellular Component	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
299	66	33			0.997452
300			33	66	0.997452
304	33			66	0.997452
305		33	66		0.997452
312		33	66		0.997452
313			66	33	0.997452
314	66		33		0.997452
316		33	66		0.997452
367		20		80	0.995493
370		20	80		0.995493
371	80		20		0.995493
373	80		20		0.995493
375		20	80		0.995493
377	80			20	0.995493
378	80			20	0.995493
384	80		20		0.995493
386	80	20			0.995493
388	80	20			0.995493
390	80	20			0.995493
391	20			80	0.995493
421	83	16			0.994512
423	83			16	0.994512
424		16	83		0.994512
427	83		16		0.994512
428	16	83			0.994512
433	83			16	0.994512
435			16	83	0.994512
436		16		83	0.994512
441		16	83		0.994512
443		16	83		0.994512
444	83			16	0.994512
445	83	16			0.994512
455		90	10		0.90298
456			10	90	0.90298
457	10			90	0.90298
459	88		11		0.923564
461	28		14		1.0
463	83	16			0.994512
464	83			16	0.994512
465	83			16	0.994512
467	83		16		0.994512
468	83	16			0.994512
469	83			16	0.994512
471	83	16			0.994512
473	83	16			0.994512
474	83			16	0.994512
475	83	16			0.994512
476	16			83	0.994512
529	16		83		0.994512
624		88	11		0.923564
663		11	88		0.923564
694			85	14	0.993533
742	83		16		0.994512
787	85			14	0.993533
788		14		85	0.993533
789			14	85	0.993533
841		83		16	0.994512
854	20		80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain