SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21654

Length: 1267 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21654

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Late embryogenesis abundant protein n=1 Tax=Picea glauca RepID=Q40869_PICGL	-	-	3.0e-09	32%
FL-Next	tr=Late embryogenesis abundant protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	32%
Blast2go	late embryogenesis abundant protein	-	-	2.27961e-10	46%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: Q40869

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 46 aas, putative chimeric sequence, your sequence is shorter than subject: 133 - 190

Fln protein: MQIMTMLFARLRRFGMSKSSRFCIHEGVLRAAGSQSNDLAYFTTVTRVGEYVSNTAEKTRESTKEAVQTAKQKAEDFVHETKETVKSTAQQIEHKTQEIGEKARSTAEEFSRQAKERTDQAADTDSIHGRRG*

Protein Length: 134

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTATTTATCACTACGTCGTGACCTTGGCTGTCACTCATGCTAGGGTGTTTTACACGAGTGGAGTTTTTGATAATCAGATTAGTTGAGGCATCCGCATTTTGTTGCAGGAGTCTGAAATATTA_-_ATGCAGATCATGACAATGTTGTTTGCAAGATTGAGGCGCTTTGGCATGTCCAAATCATCCAGATTTTGTATACATGAGGGTGTTCTGAGAGCAGCAGGAAGCCAAAGCAATGATCTGGCTTACTTCACCACTGTAACTAGAGTTGGAGAGTATGTATCAAACACAGCTGAAAAGACAAGAGAGTCCACCAAGGAAGCTGTTCAGACTGCCAAACAAAAGGCAGAAGATTTTGTCCATGAAACCAAGGAGACTGTGAAGTCCACAGCCCAACAAATTGAGCATAAAACTCAAGAAATTGGCGAGAAAGCCAGGTCTACAGCTGAAGAGTTCAGCAGACAGGCCAAAGAGCGCACTGACCAGGCAGCTGACACAGACTCGATCCATGGGAGAAGAGGCTAA___ACAAAATGTGCAAGATGCCAAGGAAGACTCCAATAAGTAGACATAACAGCTGCTAATTGATTTTTATAGAACGATATGATCATGCCATAGGGTCCAATGAAAATCTGAATAAATGTTGTGGTTCACTTATTATTGGGCAAAATGTTTACCTAGTAACTAGGTTAAAATGATACTTAATGTCTGGTTGGGCTGGCTCACTGTTTGAGTTTATTTGTTTAATAAATGTGAAAAGGTAATTTGACTCTAGTGAGGGATACAAGAATCTGCATAGTAGGAGCTCTCTGGAGTGTGAAATTGGGAGTTTGTCTGATTGAGGTTTAGTATTGAATCATGTGAATGATTTCATGTAAGATGTGGACTGGTTTGGCCCTGCCTTTGAAGGTATTGTTGTACAAATTTTAATTATTCAGTTTCTTTGACTAATCAAATTGGAAAAGTTATCTGATTCTGGTGAGTGATAGGACAATCTGCACAAGGATCTTCTGAAGATTCACTGGAGAAGCTCTGAAATTGGGAATTTGTCTTATTGATGTTTAATATTGAGGCACGTGAATGAATTTTATGTAAGATGTGGACTGTTTTGGCCCTACCTTTGTAGGTACTATTGGACAAATTTTTCATTATTCAGCATTCATAAACTGTGCTCCATGGAGTATGGAATTGGGAATTTGTCTGGTTGTTGTTTGTTGTTTAATATTGGGCTATGAGAATGATTTTGTAGT

Fln Alignment:

Contig21654___MTMLFARLRRFGMSKSSRFCIHEGVLRAAGSQSNDLAYFTTVTRVGEYVSNTAEKTRES------------------TKEAVQTAKQKAEDFVHETKETVKSTAQQIEHKTQEIGEKARSTAEEFSRQAKERTDQAAD
Q40869_______________MAALSAKMPLLSISKGST---HHGVTAMRSATAAPRVFFRTIPRAGEYGRNAAEEARETADSTAEKSKRMAEEAKERAKGATYEAKEKAKGTTYEAKEKTKSAAEEAGNKAGEMKENAREKAEGLGQRAKETTSQATE

SNPs (tot: 69)

Position	A %	C %	G %	T %	Probability
47	50	50			1.0
51		50	50		1.0
105	88	11			0.923564
108		11		88	0.923564
110	88			11	0.923564
112	11		88		0.923564
114	88	11			0.923564
116		88		11	0.923564
117		88	11		0.923564
122			11	88	0.923564
124		11		88	0.923564
125	11		88		0.923564
126		11		88	0.923564
395	83	16			0.994512
396			83	16	0.994512
397	83			16	0.994512
401		16		83	0.994512
496		75		25	0.996473
498		50		50	1.0
499	66	33			0.997452
500		33	33	33	0.997753
501		33		66	0.997452
507	33			66	1.0
511	33			66	1.0
515		33	66		1.0
517		66	33		0.997452
518	33		33	33	0.997753
583	66	33			1.0
584		22	77		0.999999
586	66	11		22	0.999999
588	66		22	11	0.999999
589		88	11		0.923564
590	77		11		0.968132
591		11		88	0.923564
592	66	22	11		0.999999
593	77			22	0.999999
594		88		11	0.923564
595	77		11	11	0.968132
596		11	77		0.968132
597	11	88			0.923564
599		11	88		0.923564
600	11	77		11	0.968132
601		11		88	0.923564
603	50	40		10	1.0
605		10		90	0.90298
606	10		90		0.90298
699	83	16			0.999991
702	83	16			0.999991
703	83		16		0.999991
704		83		16	0.999991
705			16	83	0.999991
707		16	83		0.999991
708		16	83		0.999991
710		4	9	86	0.999642
711	72		4	9	1.0
712	72	9	13	4	1.0
713	81	4	13		1.0
714	72	22	4		1.0
716		9	90		0.999842
717	86			13	1.0
718		13		72	1.0
723	80	14	4		1.0
961		85	14		0.993533
962	14			85	0.993533
963		14		85	0.993533
965	14		85		0.993533
967	14	85			0.993533
971	14			85	0.993533
984		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain