SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21644

Length: 518 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene21644
GGTATTGGGCTGGTCATATCAATAATTTCTATGACGTGTTGCCTTAGTTGAAATCAAGCGTTTGGATATTGTCATAACTCTGGATTTGGTCCATGATATAGTCACACCAGTTCCCATGACCATTTTTTGGCAAGTTCCCCAGTATTTCTTAATTGGTGCTTCAGAAGTTTTTTTCTTTATAGGGCAGCTGGAGTTTTTCTATGATCAGTCTCCTGATGCAATGCGCAGCTTGTGCAGTGCTCTTTCTCTTCTTACAACATCATTAGGAAGCTATTTGAGCACCTTAATTGTTACTATTGTTACTTCTGTCACCACTAGAGGAGGAAGACAGGGATGGATACCTGACAATCTCAATGAAGGCCATCTGGACAACTACTTTTGGCTTCTAGCTTTCCTTAGCTTTCTGAACTTCTTGGTATATGTCGCTTGTGTATACAGATATCAGTACAAGAAGGCCAACTGAGTCTAATTCCAACTATGTGTAATCCATTGCAGTTATCCATTAGTCATTTCTCTCT

Ace file of the UniGene sp_v2.0_unigene21644 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter n=1 Tax=Hakea actites RepID=A6YJX4_9MAGN	-	-	4.0e-36	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	peptide transporter ptr2-like	-	-	0.0	82%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 154 - 594

Fln protein: VLGWSYQ*FL*RVALVEIKRLDIVITLDLVHDIVTPVPMTIFWQVPQYFLIGASEVFFFIGQLEFFYDQSPDAMRSLCSALSLLTTSLGSYLSTLIVTIVTSVTTRGGRQGWIPDNLNEGHLDNYFWLLAFLSFLNFLVYVACVYRYQYKKAN*

Protein Length: 155

Fln nts: GGTATTGGGCTGGTCATATCAATAATTTCTATGACGTGTTGCCTTAGTTGAAATCAAGCGTTTGGATATTGTCATAACTCTGGATTTGGTCCATGATATAGTCACACCAGTTCCCATGACCATTTTTTGGCAAGTTCCCCAGTATTTCTTAATTGGTGCTTCAGAAGTTTTTTTCTTTATAGGGCAGCTGGAGTTTTTCTATGATCAGTCTCCTGATGCAATGCGCAGCTTGTGCAGTGCTCTTTCTCTTCTTACAACATCATTAGGAAGCTATTTGAGCACCTTAATTGTTACTATTGTTACTTCTGTCACCACTAGAGGAGGAAGACAGGGATGGATACCTGACAATCTCAATGAAGGCCATCTGGACAACTACTTTTGGCTTCTAGCTTTCCTTAGCTTTCTGAACTTCTTGGTATATGTCGCTTGTGTATACAGATATCAGTACAAGAAGGCCAACTGA___GTCTAATTCCAACTATGTGTAATCCATTGCAGTTATCCATTAGTCATTTCTCTCT

Fln Alignment:

Contig21644___ALVEIKRLDIVITLDLVHDIVTPVPMTIFWQVPQYFLIGASEVFFFIGQLEFFYDQSPDAMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRGGRQGWIPDNLNEGHLDNYFWLLAFLSFLNFLVYVACVYRYQYKKAN
A9NVR2_______________ALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKKAS

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
190			18	81	0.999994
201		81		18	0.999994
211		81		18	0.999994
213			18	81	0.999994
214	72		27		1.0
221	54		45		1.0
224	20		80		0.999996
240		20		80	0.999996
249		60		40	1.0
255	20		80		0.999996
259	20	80			0.999996
260		40		60	1.0
273			90	10	0.90298
274	20	80			0.999996
287		20		80	0.999996
334			20	80	0.999996
350	42		57		1.0
352		85		14	0.993533
358	85	14			0.993533
365	42		57		1.0
366	14		85		0.993533
372	85	14			0.993533
373	85	14			0.993533
380	33		66		1.0
382			66	33	1.0
383	66		33		1.0
385		50		50	1.0
386	33			66	1.0
393	66		33		1.0
394	66		33		1.0
395	66			33	1.0
396	66	33			1.0
397	33			66	1.0
398		33	66		1.0
400	33			66	1.0
402	66		33		1.0
413		25		75	0.996473
420	50		50		1.0
437		25	75		0.996473
446	50	50			1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain