SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21606

Length: 3186 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene21606
CGTCGTGACCTTGGCTGTCACTCAATTTTAGCAAAATAATTGCAGTCTATTTCTATAGGGAAGGAACACAGAAATTCCTTTTAGCAAAATAATAAATACGTGTATGCTGCGGATTTGCAAAAGATTTCAAAGCAAAACCAGTGTTGATCTCGAAAAACTTCCGAGCAGTGTGTGTAAGCTGATATCGAAGTTCAAGACAGCTCGAAAAGAGCCCAAAGCAAAACCAGTGTTGAACTGGGAAAATTTCCACAGCAATCAGTGAAAGCCAATATCGAAATTCAGAACAACTGGAGGAAAGACTACAAGAAGTTGATGATGTTGTCATATCTCGAATCATTTGGTGTAGAAAATCACATCCTTCAGAGGATGGATATGTTGAATTGCACGAAGGTATACAGTAGATTCGATGGTCTGGTCGAGGGCCTTATTCCAAAAGTTCAGGAGCTCTTTTTGCTGGAACAACGAAAGCCCAGAAAACAGCAAAATCCCATCTATGAGCAGTTCCTGAACATCCTCAATAATGGCGTTGCATTGGTGAAAAAGTGTGAGAAAACCAGCCGTTTTAACGTTTTCCAGAAACTCAGATATGCTTCTCAAATCCACCAGCTGGAGAAGGAGATTCTTGACTTGGTTCAGTACCAGATGCCTGTCCAATTAAGTCTTGATGTTACGAATCTTGTAACAGAGATAAAGCGCATTCGCCAACTGAGCGAGCAGTCCATGGATGAGAGAATGGTAAATGAAGCAATCGTGGCCAAGCTCACCAATGATCCACTGAAGAATGCCATGATGCTACAACAAATGGGTTCAGATGACATGCTTGATGGAGATTTGGAAGAAGCTCCTGCATGTAGTTATAATGGCTCGGTGAAGTCTGATTTTATCGTAGGGCTTGAGGAAAATATTTGGAATTTGAAGAGAATTCTGCTCCGGAGAGATGTGTCCGTGGTTGGGGTGCAAGGTATGGGGGGCGTTGGCAAAACGACCATGGCGTTGGCCCTTTCCGATGACCAAGAAATCAAAGGTGCTTTCGGAAACAATATCATTTTCATCACAGTGTCACAGTCTCCAAACCTGAAGGTAATTTTAGAGACTATGTGGGAGAAGATTGTTCGCAGGAAGAAACCTGTTTTTCAGAGTGTGGAGGATGCACACAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCTAAGCCAACTCTGGTGGTGCTGGATGATGTCTGGTCTAGGGCAAATTTGGAACACTTGATATTTGAAGGTGAAGGTTATAAAACCCTTGTAACAACCCGAATTCGTTCTATTATACCCACAGCCACCTCTACACAGATTTATGAATTGCCCGTGCTGGATGATGCCAATGCTCAGTCCCTCTTTTGCTTCTGGGCGTTTGGACAGAAATCAATTCCAACAGATGCAGATGAACATCTAGTCAAGCAGGTGCAAGCAGAATGCAAAGGCCTGCCACTCGCTCTCAAGGTGATCGGAAGCTCTTTGCGTGGTGAAAGTCGCCCAGTGTGGGAGAGTGCTAAGAACAAGCTCCTGAATGGGGAGTCAATATCAGATTATCATAAAGAAGGACTTCTTAGATGCTTGGAGAGCAGTATTGATGTCCTGGATGAGGAAGTACGGGAGTGCTTCTTAGACCTGGGGTCCTTTCCAGAGGATAGGAAAATATCTGTGGACGCATTATTGGACATCTGGGTTTATGTGCGAAAGATGGAGTGGCACGATGCTTTTGTTATCTTATTGGAACTCGCTAGTAGGAATCTGTTAAACCTAACAAGCAATCTCAGGAGTTGTGCCATCAATTATGGAAGTACCTCGGAGCTCTACTTTTCTCAACATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCCCGAGACTGGATTGTGAACAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGATGGATTGCCAGGGAAATGGGAGTTACTCAAAGACCAAGCTTTTAATGCCCAAGTTGTTTCAATTCACACAGGTGCAATGGAAGAGGATCAGTGGTGCGAGATGAATTTTCGACGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGATATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATCAGAAGTCCTTGGTGCCCGTGAATGTAAATGGTGATTTCCTTTACACATT

Ace file of the UniGene sp_v2.0_unigene21606 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=5 Tax=Pinaceae RepID=Q1L6F3_PINLA	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	cc-nbs-lrr protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	apoplast	GO:0048046	Cellular Component	0.0	76%

Source	InterPros	Term	Type	Identity
Sma3		IPR014011	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKC3

Fln msg:

Fln protein: MMLSYLESFGVENHILQRMDMLNCTKVYSRFDGLVEGLIPKVQELFLLEQRKPRKQQNPIYEQFLNILNNGVALVKKCEKTSRFNVFQKLRYASQIHQLEKEILDLVQYQMPVQLSLDVTNLVTEIKRIRQLSEQSMDERMVNEAIVAKLTNDPLKNAMMLQQMGSDDMLDGDLEEAPACSYNGSVKSDFIVGLEENIWNLKRILLRRDVSVVGVQGMGGVGKTTMALALSDDQEIKGAFGNNIIFITVSQSPNLKVILETMWEKIVRRKKPVFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLEHLIFEGEGYKTLVTTRIRSIIPTATSTQIYELPVLDDANAQSLFCFWAFGQKSIPTDADEHLVKQVQAECKGLPLALKVIGSSLRGESRPVWESAKNKLLNGESISDYHKEGLLRCLESSIDVLDEEVRECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELASRNLLNLTSNLRSCAINYGSTSELYFSQHDVMRDLALYLASRDWIVNRKRLFMPKKEDGLPGKWELLKDQAFNAQVVSIHTGAMEEDQWCEMNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG*

Protein Length: 843

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAGCAAAATAATTGCAGTCTATTTCTATAGGGAAGGAACACAGAAATTCCTTTTAGCAAAATAATAAATACGTGTATGCTGCGGATTTGCAAAAGATTTCAAAGCAAAACCAGTGTTGATCTCGAAAAACTTCCGAGCAGTGTGTGTAAGCTGATATCGAAGTTCAAGACAGCTCGAAAAGAGCCCAAAGCAAAACCAGTGTTGAACTGGGAAAATTTCCACAGCAATCAGTGAAAGCCAATATCGAAATTCAGAACAACTGGAGGAAAGACTACAAGAAGTTG_-_ATGATGTTGTCATATCTCGAATCATTTGGTGTAGAAAATCACATCCTTCAGAGGATGGATATGTTGAATTGCACGAAGGTATACAGTAGATTCGATGGTCTGGTCGAGGGCCTTATTCCAAAAGTTCAGGAGCTCTTTTTGCTGGAACAACGAAAGCCCAGAAAACAGCAAAATCCCATCTATGAGCAGTTCCTGAACATCCTCAATAATGGCGTTGCATTGGTGAAAAAGTGTGAGAAAACCAGCCGTTTTAACGTTTTCCAGAAACTCAGATATGCTTCTCAAATCCACCAGCTGGAGAAGGAGATTCTTGACTTGGTTCAGTACCAGATGCCTGTCCAATTAAGTCTTGATGTTACGAATCTTGTAACAGAGATAAAGCGCATTCGCCAACTGAGCGAGCAGTCCATGGATGAGAGAATGGTAAATGAAGCAATCGTGGCCAAGCTCACCAATGATCCACTGAAGAATGCCATGATGCTACAACAAATGGGTTCAGATGACATGCTTGATGGAGATTTGGAAGAAGCTCCTGCATGTAGTTATAATGGCTCGGTGAAGTCTGATTTTATCGTAGGGCTTGAGGAAAATATTTGGAATTTGAAGAGAATTCTGCTCCGGAGAGATGTGTCCGTGGTTGGGGTGCAAGGTATGGGGGGCGTTGGCAAAACGACCATGGCGTTGGCCCTTTCCGATGACCAAGAAATCAAAGGTGCTTTCGGAAACAATATCATTTTCATCACAGTGTCACAGTCTCCAAACCTGAAGGTAATTTTAGAGACTATGTGGGAGAAGATTGTTCGCAGGAAGAAACCTGTTTTTCAGAGTGTGGAGGATGCACACAGACAGCTGCAGCAGCAGCTGCTGAGGCAAGCTAAGCCAACTCTGGTGGTGCTGGATGATGTCTGGTCTAGGGCAAATTTGGAACACTTGATATTTGAAGGTGAAGGTTATAAAACCCTTGTAACAACCCGAATTCGTTCTATTATACCCACAGCCACCTCTACACAGATTTATGAATTGCCCGTGCTGGATGATGCCAATGCTCAGTCCCTCTTTTGCTTCTGGGCGTTTGGACAGAAATCAATTCCAACAGATGCAGATGAACATCTAGTCAAGCAGGTGCAAGCAGAATGCAAAGGCCTGCCACTCGCTCTCAAGGTGATCGGAAGCTCTTTGCGTGGTGAAAGTCGCCCAGTGTGGGAGAGTGCTAAGAACAAGCTCCTGAATGGGGAGTCAATATCAGATTATCATAAAGAAGGACTTCTTAGATGCTTGGAGAGCAGTATTGATGTCCTGGATGAGGAAGTACGGGAGTGCTTCTTAGACCTGGGGTCCTTTCCAGAGGATAGGAAAATATCTGTGGACGCATTATTGGACATCTGGGTTTATGTGCGAAAGATGGAGTGGCACGATGCTTTTGTTATCTTATTGGAACTCGCTAGTAGGAATCTGTTAAACCTAACAAGCAATCTCAGGAGTTGTGCCATCAATTATGGAAGTACCTCGGAGCTCTACTTTTCTCAACATGATGTAATGCGAGACTTGGCCCTATATTTGGCATCCCGAGACTGGATTGTGAACAGGAAGAGGTTGTTTATGCCTAAAAAGGAGGATGGATTGCCAGGGAAATGGGAGTTACTCAAAGACCAAGCTTTTAATGCCCAAGTTGTTTCAATTCACACAGGTGCAATGGAAGAGGATCAGTGGTGCGAGATGAATTTTCGACGAGCAGAAGCCTTGGTTTTAAATTTTTCTGCGGGCAGCTACTTTCTTCCTTCGTTTTTAAGTTCTATGACAAAGCTTAAAGTCCTCATAGTACTCAATTATGGATCAAAGAGAGCCACAGTAAACGGATTACCGTCGCCATCTTCTCTCCCGCAGCTTAAGACCATACGCTTGGAGAGGTTGAATGTGCCTTCACTTCAAGAGCAGAGCAAACTCTTTCAGAACTTAGAAAAACTCTCGTTGAGCTTATGTGAAGGACTTGGAAATATGTCCAGGTTTAACACCACCCAGTCGAGCCTAAAGCTTCCCATAATGCTAGATTTTAACTTGGACCACTGCTGTGATTTGGACGAGTTGCCCTCTGATATTTGCGACATGTCTTCAGTGGTAAACTGGTCTATCACCAACTGTCACCTTCTTCAAAAGTTACCTGATGACATGGAAAAGCTTAGCTCTTTAAGAATGTTAAGGCTATCTGCATGTCTAGGCTTGAAAGAGCTACCAGCATCCATTGGAAAACTTGGGAAGCTTGAATATCTGGACATTTCGCTGTGTGAGTGCTTAAAGGAAATTCCCGAGGAAATAGGACAACTAAAGAAACTCCAAGTACTTGACATGAGAGAGTGCTCTCGTTTGAGGAAGCTGCCTAAGTCAGTGGAAGGCATGAAATCTCTGAGGCATGTTATCTGCGATGAGAAGATTGGGCAGCAATGGTTGCGTGTCAAGAGCTCTGTTCTCAACGAGCTTAAAGTTGAAATTGTGGATGCACATTTCAGCTTGGATTGGCTCGATGGTTGA___TATCACCCAGACAGGATGCAGGTGCAACTAGACTGCAATTCACCTGCATTCATGACGAGGACATGGTGCGGTCAAGACCATTTACGCTACTTGCATTTGTTGAAGGTCCAACTTGGTGTTACCCGTGCGTGTAGCTATTCTGAATCTCTACTTGGGTGTTTTTATGGCTTTATGTCGTCTGTGTGAGTGTGCACGCTTTATTTTGAACAAGGACACTTTATTTTAAGAATATAGAATTATGCCACGTAGGTTTGACGTATGTGTGGAGTCATAGGTATTGGGAAGTTACCAAGCTTATCAGAAGTCCTTGGTGCCCGTGAATGTAAATGGTGATTTCCTTTACACATT

Fln Alignment:

Contig21606___NHILQRMDMLNCTKVYSRFDGLVEGLIPKVQELFLLEQRKPRKQQNPIYEQFLNILNNGVALVKKCEKTSRFNVFQKLRYASQIHQLEKEILDLVQYQMPVQLSLDVTNLVTEIKRIRQLSEQ-SMDERMVNEAIVAKLTNDPLKNAMMLQQMGSDDMLDGDLEEAPACSYNGSVKSDFIVGLEENIWNLKRILLRRDXXXXXXXXXXXXGKTTMALALSDDQEIKGAFGNNIIFITVSQSPNLKVILETMWEKIVRRKKPVFQSVEDAHXXXXXXXXXQAKPTLVVLDDVWSRANLEHLIFEGEGYKTLVTTRIRSIIPTATSTQIYELPVLDDANAQSLFCFWAFGQKSIPTDADEHLVKQVQAECKGLPLALKVIGSSLRGESRPVWESAKNKLLNGESISDYHKEGLLRCLESSIDVLDEEVRECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVIXXXXXXXXXXXXXXXXXSCAINYGSTSELYFSQHDVMRDLALYLASRDWIVNRKRLFMPKKEDGLPGKWELLKDQAFNAQVVSIHTGAMEEDQWCEMNFRRAEALVLNFSAGSYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPSPSSLPQLKTIRLERLNVPSLQEQSKLFQNLEKLSLSLCEGLGNMSRFNTTQSSLKLPIMLDFNLDHCCDLDELPSDICDMSSVVNWSITNCHLLQKLPDDMEKLSSLRMLRLSACLGLKELPASIGKLGKLEYLDISLCECLKEIPEEIGQLKKLQVLDMRECSRLRKLPKSVEGMKSLRHVICDEKIGQQWLRVKSSVLNELKVEIVDAHFSLDWLDG
B8LKC3_______________DHILYGIDILNCKKSYSRFDGLVEGLLPKVQELYLSEQRKPKKEKNPIYEQFLNILNDGVALVKKCKNTSRYNVFQNLRYASQIHQLEKEITDFVRYQMPVNLSLDVKNFIEELKNLRQLCEKGSVDERKVNEAIVPKLTNDPQKNAVMLQQIGSDDMFDGVLDEAPP-----SPKSDFVVGLEKNISNVKRILLDRDVSVVGVDGMGGVGKTTMAMALSDDQEIKGVFRNNIVFITVSQSPNLKVILETMWEKIVRRKKPEFQSVEDAHRQLQQQLLRQAKPTLVVLDDVWSRANLENLLFEGEGYKTLVTTRDRSTIPTTTSIRIYELPVLDDADAMPLFCFWAFGQKSIPSSADEHLVKQVQAECKGLPLALKVIGSSLHGEPRPVWESAKNKLRNGESISDYHKEGLLRRLESSIDVLDEEARECFLDLGSFPEDRKISVDALLDIWVYVRKMEWHDAFVILLELARRNLLNLTSNLRSRAINYGSASELYFSQHDVMRDLALHLASRDRIVQRKRLFMPKKEESLPGKWEVLKDQAFDAQVVSIHTGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLPAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQQWLRVKSSVLKELRVEIVDAHFSLDWLDG

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
710		12		87	0.992554
920	83		16		0.994512
2994	11			88	0.923564
3005	87	12			0.992554
3006		12		87	0.992554
3009	12		87		0.992554
3010		87		12	0.992554
3011	12			87	0.992554
3014	12	87			0.992554
3062	83		16		0.994512
3065		83	16		0.994512
3066	16	16		66	0.988813
3067		16		83	0.994512
3068	16		16	66	0.988813
3069	16		16	66	0.988813
3070		16	83		0.994512
3071		83		16	0.994512
3072	83		16		0.994512
3074	83		16		0.994512
3076		16		83	0.994512
3079	16	83			0.994512
3081	16	66	16		0.988813
3082	66	16		16	0.988813
3086		20		80	0.995493
3087	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain