SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21593

Length: 2473 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene21593
CGTCGTGACCTTGGCTGTCACTCAATCATTTAGCGTGTCTTTCCCTCCAATTTCAAGATTTTTTTCATTCTCTGATGAGCTCTGCTACCGAAAATTATGAAACCATCGGAAAGGTAGGGTGCACGGATTAAGCTCATTTGCAGGAAACACATACTTCAACAATGGCAGGAACGGGTTTCTCGTTCGGCTCATCCTCGTCTTCAACGCCTGCCATGGGCGCCTCCACCGGCTCTGCATCCCAGCCGACTTTCGGTTTTTCGTTCCCTAACCAATCCGCGGGCTCTTCGATCTTCGGCTCGTCGTCCACTTCAGCAGCAACACCCTCCTCTGCATCCTCACTATTCGGATCTTCGACGCAATCATCTACATTGTTCGGAACACCGTTGTCTTCCCCTTCAAATTTCGGAACCCCGTCGTCTCAGACCTCGGCACCATCGTCTACGCCTGCGTTCTCGTTCGGCGGTGGCTCCACTTTTCAACCTAAATCCACGGCTTCCTCGTTCACTAGCTTTTCTTTAGGTTCGTCCTCGGCTCCAGCACCTTCATTTTCGTTCGGCACCTCTGCATCTTCGGCACCTGCATCTTCCTCGGCCTCAGCCCCCAGTTTCCTGTTTGGCACCGCTGCTTTGACTTCGGCCACGCCTTCTTTCGCTTTTAGCAACCCGGCGTCATCCGCTGGTTTCCCATTCGGTACTCCGACGTCCTCCGCGGCAACCCCATCTTTTAGTACTCCCGCTACTTCGAGCCCCAGTTTGTCCTTCGGTACGCCCGCTGCATCGTCGGCTTCAGCCTCAGGTTTTTCTTTTGCGACCCCGACGTCCTCATCCTCAACGAGCGGTCTGTCTTTCGGTGCAGCTTCCCAGCCAGGGTCGACCCCGGGACCTTCTTTTGGGACGCCCACACAGCCCGCTTCGAGCCCAGCTCCATTGTTTGGGACCCCGCCATCGGCGTTCAAAACCCCAGGCACGTCTTTTGGAACACCTACACAAGCATCTTCAGCCGCACCCTTTGCTTTCAACACTGCTGTGGCAACCTCATCGTCTTCAACCTCAAGTCTGTCTTTTGGTACTTCCGGGCCATCTTCGGTTTCCACCCCAGGTTTACCATTTGGAACTCCCGCATCATCATCCACTTCGACACCAGGCTTAGCTTTTGGAACCCCGGCTTCTTCGTTTTCCGGGTCTAGCTCATCTCAGCCTTCATTTGGATTTGGCAATGTGGGTTCTGGTGCTGCAACTGCTGCGCCATCCTCACAGATGCCTTCATTATCTGGAGGGTTTGGTTCATCCGCTTCTTCTACAGGCGTATCGTTTCCTTTGCTCGGTCAATCCAGTGCGGCAAAACAGTCTACCGTTGTTGCTACTTCTGCTTCTACAGGAATGCAATCGTTTGGGCAGCCATCTTTGACAGGGGCAAGTTCTGCCGGCACATCTGGCGCATTCCCTAGCTTCTCCTTATCTTCAGCATCAACGTCATTAACATCTGCACCGTTGTTAATTAGTACTGCATCTACTTCATCAGCGACAGCAACTGCATCTACAACTAGTACGCCACTTTCTGGTTTTGCTGGAGTTACTGCATCTAGTGCAGCCCAAGTGTCATCTTCTGCTACTGCTGGAACAACTGCAGGAAACACAGGATCTGCAGTAATAGCTTCATCGCTTCGTACACCTCAAATTCCCTCTGAAATAACTGGAAAAACTGTTGAAGAGATTATCAAAGATTGGAATTCTGAGTTACAAGAACGTACTACAAAATTCCGAAAGCAAGCTGAGGCTTTAGCAGAATGGGATCGGAGGATCTTACGGAATCGAAATGTACTTATAAAGCTGGAGGTAGAAAAGGCCTTACAAAGCATGGAAGAAGAGGCTGAGAGGATATACAAGGAGGAGCGGCCATCCATTACTGAAGATGAAGCTGCATCAGTTAGAGATTTAATGTATGAACAGGCAGAGTATATTGAAAGAGAAATGGAGCAGATGGGAGAACAAATTAAGCGAATAATAGAGACTGTAAATGCAAATCAGGGTGGGGACTTGGATAACTCTGATGGGATCAGTCCGCTGGACATTGTAGTAAGAATTTTGAACAATCAATTGAATTCCCTGGTTTGGATTGATGAAAAGGCTGGAGAGTTATCATCGCGTATAAACAAGCTTGCTGATCACGGGGCTGCTTTAGATAGAGGTCCTCCGAGGTCCAGACATTGGATTGGTTGACAGCAATTGATAGAAAACGTGCATACTAATAGAAGCTTTGCCACGTGTTGCAAATGATATGTGCCCTGCAGTTTGGAGTATACATGCTTTGGCAATTTTTTATTTCAAGTTTCTTGTCCTTGTAATATCCTTCATTGAAATGAGCGAAAAATGTCTTTTTACTGGTTATTAGGATCCTATAATACATTTTGCAAGAAGGCTTCTAATCATTGTAAAATATAGGAAATAATGATTTTCTTGTGTGAAATAATGTT

Ace file of the UniGene sp_v2.0_unigene21593

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	structural constituent of nuclear pore [Arabidopsis thaliana] gb\|AAM91808.1\| unknown protein [Arabidopsis thaliana] gb\|AEC10495.1\| structural constituent of nuclear pore [Arabidopsis thaliana]	-	-	54%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	66%
Blast2go	nuclear pore glycoprotein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	69%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphopantetheine attachment site	IPR006162	-	0.0	-
Sma3	Nucleoporin, NSP1-like, C-terminal	IPR007758	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9MV05

Fln msg: your sequence is longer than subject: 686 - 241

Fln protein: MAGTGFSFGSSSSSTPAMGASTGSASQPTFGFSFPNQSAGSSIFGSSSTSAATPSSASSLFGSSTQSSTLFGTPLSSPSNFGTPSSQTSAPSSTPAFSFGGGSTFQPKSTASSFTSFSLGSSSAPAPSFSFGTSASSAPASSSASAPSFLFGTAALTSATPSFAFSNPASSAGFPFGTPTSSAATPSFSTPATSSPSLSFGTPAASSASASGFSFATPTSSSSTSGLSFGAASQPGSTPGPSFGTPTQPASSPAPLFGTPPSAFKTPGTSFGTPTQASSAAPFAFNTAVATSSSSTSSLSFGTSGPSSVSTPGLPFGTPASSSTSTPGLAFGTPASSFSGSSSSQPSFGFGNVGSGAATAAPSSQMPSLSGGFGSSASSTGVSFPLLGQSSAAKQSTVVATSASTGMQSFGQPSLTGASSAGTSGAFPSFSLSSASTSLTSAPLLISTASTSSATATASTTSTPLSGFAGVTASSAAQVSSSATAGTTAGNTGSAVIASSLRTPQIPSEITGKTVEEIIKDWNSELQERTTKFRKQAEALAEWDRRILRNRNVLIKLEVEKALQSMEEEAERIYKEERPSITEDEAASVRDLMYEQAEYIEREMEQMGEQIKRIIETVNANQGGDLDNSDGISPLDIVVRILNNQLNSLVWIDEKAGELSSRINKLADHGAALDRGPPRSRHWIG*

Protein Length: 687

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCATTTAGCGTGTCTTTCCCTCCAATTTCAAGATTTTTTTCATTCTCTGATGAGCTCTGCTACCGAAAATTATGAAACCATCGGAAAGGTAGGGTGCACGGATTAAGCTCATTTGCAGGAAACACATACTTCAACA_-_ATGGCAGGAACGGGTTTCTCGTTCGGCTCATCCTCGTCTTCAACGCCTGCCATGGGCGCCTCCACCGGCTCTGCATCCCAGCCGACTTTCGGTTTTTCGTTCCCTAACCAATCCGCGGGCTCTTCGATCTTCGGCTCGTCGTCCACTTCAGCAGCAACACCCTCCTCTGCATCCTCACTATTCGGATCTTCGACGCAATCATCTACATTGTTCGGAACACCGTTGTCTTCCCCTTCAAATTTCGGAACCCCGTCGTCTCAGACCTCGGCACCATCGTCTACGCCTGCGTTCTCGTTCGGCGGTGGCTCCACTTTTCAACCTAAATCCACGGCTTCCTCGTTCACTAGCTTTTCTTTAGGTTCGTCCTCGGCTCCAGCACCTTCATTTTCGTTCGGCACCTCTGCATCTTCGGCACCTGCATCTTCCTCGGCCTCAGCCCCCAGTTTCCTGTTTGGCACCGCTGCTTTGACTTCGGCCACGCCTTCTTTCGCTTTTAGCAACCCGGCGTCATCCGCTGGTTTCCCATTCGGTACTCCGACGTCCTCCGCGGCAACCCCATCTTTTAGTACTCCCGCTACTTCGAGCCCCAGTTTGTCCTTCGGTACGCCCGCTGCATCGTCGGCTTCAGCCTCAGGTTTTTCTTTTGCGACCCCGACGTCCTCATCCTCAACGAGCGGTCTGTCTTTCGGTGCAGCTTCCCAGCCAGGGTCGACCCCGGGACCTTCTTTTGGGACGCCCACACAGCCCGCTTCGAGCCCAGCTCCATTGTTTGGGACCCCGCCATCGGCGTTCAAAACCCCAGGCACGTCTTTTGGAACACCTACACAAGCATCTTCAGCCGCACCCTTTGCTTTCAACACTGCTGTGGCAACCTCATCGTCTTCAACCTCAAGTCTGTCTTTTGGTACTTCCGGGCCATCTTCGGTTTCCACCCCAGGTTTACCATTTGGAACTCCCGCATCATCATCCACTTCGACACCAGGCTTAGCTTTTGGAACCCCGGCTTCTTCGTTTTCCGGGTCTAGCTCATCTCAGCCTTCATTTGGATTTGGCAATGTGGGTTCTGGTGCTGCAACTGCTGCGCCATCCTCACAGATGCCTTCATTATCTGGAGGGTTTGGTTCATCCGCTTCTTCTACAGGCGTATCGTTTCCTTTGCTCGGTCAATCCAGTGCGGCAAAACAGTCTACCGTTGTTGCTACTTCTGCTTCTACAGGAATGCAATCGTTTGGGCAGCCATCTTTGACAGGGGCAAGTTCTGCCGGCACATCTGGCGCATTCCCTAGCTTCTCCTTATCTTCAGCATCAACGTCATTAACATCTGCACCGTTGTTAATTAGTACTGCATCTACTTCATCAGCGACAGCAACTGCATCTACAACTAGTACGCCACTTTCTGGTTTTGCTGGAGTTACTGCATCTAGTGCAGCCCAAGTGTCATCTTCTGCTACTGCTGGAACAACTGCAGGAAACACAGGATCTGCAGTAATAGCTTCATCGCTTCGTACACCTCAAATTCCCTCTGAAATAACTGGAAAAACTGTTGAAGAGATTATCAAAGATTGGAATTCTGAGTTACAAGAACGTACTACAAAATTCCGAAAGCAAGCTGAGGCTTTAGCAGAATGGGATCGGAGGATCTTACGGAATCGAAATGTACTTATAAAGCTGGAGGTAGAAAAGGCCTTACAAAGCATGGAAGAAGAGGCTGAGAGGATATACAAGGAGGAGCGGCCATCCATTACTGAAGATGAAGCTGCATCAGTTAGAGATTTAATGTATGAACAGGCAGAGTATATTGAAAGAGAAATGGAGCAGATGGGAGAACAAATTAAGCGAATAATAGAGACTGTAAATGCAAATCAGGGTGGGGACTTGGATAACTCTGATGGGATCAGTCCGCTGGACATTGTAGTAAGAATTTTGAACAATCAATTGAATTCCCTGGTTTGGATTGATGAAAAGGCTGGAGAGTTATCATCGCGTATAAACAAGCTTGCTGATCACGGGGCTGCTTTAGATAGAGGTCCTCCGAGGTCCAGACATTGGATTGGTTGA___CAGCAATTGATAGAAAACGTGCATACTAATAGAAGCTTTGCCACGTGTTGCAAATGATATGTGCCCTGCAGTTTGGAGTATACATGCTTTGGCAATTTTTTATTTCAAGTTTCTTGTCCTTGTAATATCCTTCATTGAAATGAGCGAAAAATGTCTTTTTACTGGTTATTAGGATCCTATAATACATTTTGCAAGAAGGCTTCTAATCATTGTAAAATATAGGAAATAATGATTTTCTTGTGTGAAATAATGTT

Fln Alignment:

Contig21593___TPQIPSEITGKTVEEIIKDWNSELQERTTKFRKQAEALAEWDRRILRNRNVLIKLEVE--------------------------KALQSMXXXXXXXXXXXRPSITEDEAASVRDLMYEQAEYIEREMEQMGEQIKRIIETVNANQGGDLDNSDGISPLDIVVRILNNQLNSLVWIDEKAGELSSRINKLADHGAALDR
B9MV05_______________TPKLPSEITGKTVEEIIKEWNSELQERTGKFRKQATAIAEWDKRILQNRDVLLRLEIEVAKVVETQANLERKLELIETHQQEVDKALQSIEEEAERIYKDERGSLLDDEAASTRDAMYEQAEFIEREMEQMTEQIKSVIQTVNANQGGELDAIDGMTPLDMVVRILNNQLSSLMWIDEKAEEFSSRIQKLANQGSAADR

SNPs (tot: 58)

Position	A %	C %	G %	T %	Probability
24	80	20			0.995493
25	80		20		0.995493
29			20	80	0.995493
31			20	80	0.995493
33		20	80		0.995493
36			87	12	0.992554
37		18		72	0.999994
39	27		9	63	1.0
41		27	27	45	1.0
43			27	72	1.0
44	27	45	27		1.0
45	9	63	27		1.0
48		45	18	36	1.0
49	9	45	27	18	1.0
50	54	18	27		1.0
51	63	36			1.0
53		18	27	54	1.0
57	9	27			1.0
58	63			36	1.0
59		27	63	9	1.0
126	9	90			0.999842
196		70	29		1.0
275		14		85	0.993533
286			12	87	0.992554
291		12		87	0.992554
304	12		87		0.992554
305		12		87	0.992554
308	12	87			0.992554
344	88	11			0.923564
345			11	88	0.923564
351		12		87	0.992554
361	87			12	0.992554
362	87		12		0.992554
368	14			85	0.993533
373		10		90	0.90298
381	90	10			0.90298
383	90			10	0.90298
384		90		10	0.90298
385		90	10		0.90298
387		10		90	0.90298
973	16		83		0.999991
1078		60	40		1.0
1126	88		11		0.923564
1138		11		88	0.923564
1144	88			11	0.923564
1145		88		11	0.923564
1190	88	11			0.923564
1191			88	11	0.923564
1193	11			88	0.923564
1236		88		11	0.923564
1312		14	85		0.993533
1322		16		83	0.994512
1399			66	33	1.0
1488		20		80	0.995493
1592	57		42		1.0
1617			28	71	1.0
1661	80		20		0.995493
1684	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain