SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21555

Length: 1502 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21555

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)	-	-	5.0e-29	31%
FL-Next	tr=11-beta-hydroxysteroid dehydrogenase-like protein; Pinus taeda (Loblolly pine).	-	-	0.0	43%
Blast2go	corticosteroid 11-beta-	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q0GJJ3

Fln msg:

Fln protein: MDWIQLMLNLTMPPMAILFLSVVLPPLALMRMLYWSYHLIFRENMRGKTVLITGASSGIGEQMAYCYAKKGANLMLVARREERLKAVADKSRSLGAKNVHVIAADVTKEEDCKRFIDETVNLYGCLDHLVNNAAIAGSFLFEEANTSAFPHVMDVTFWGNVYPTYYALPHLKRSSGRIVVTASAAGWLPMPRMSIYNAGKAAVINFYDSLRAEVGSSVSITIATPGWIESEMTMGKFVTKRGEVEVDQETRDVQVGPSSVVFTEDCAKAIVEGACRGKRYVTIPMWYNVIFLYRILAPELLQWVFYIFFVKKTSTPGWKQQPLTKAVLDATGAKKLLYPSSIQSQPQSQSQSQSPLSTKSD*

Protein Length: 363

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCGCTGAAATTATCATAGTGTTAGGCTCAATTGAGTTTCAGTGGAGAAAAAAGTTAACAGAGTAGCAAG_-_ATGGATTGGATACAGTTAATGCTCAATTTGACGATGCCTCCTATGGCGATACTCTTCTTATCAGTGGTCCTTCCTCCATTGGCACTGATGAGGATGTTATATTGGTCTTATCACCTCATCTTTCGCGAGAATATGAGAGGGAAAACGGTGCTCATCACCGGTGCATCTTCTGGAATTGGGGAGCAAATGGCCTATTGCTATGCCAAGAAAGGAGCGAATCTAATGCTGGTTGCTAGGAGGGAAGAACGTCTGAAAGCTGTAGCTGACAAATCAAGGTCTCTGGGCGCTAAAAATGTTCATGTGATTGCTGCCGATGTGACCAAAGAAGAAGACTGTAAGAGATTCATAGACGAGACTGTAAATCTCTATGGTTGCTTGGACCATCTGGTGAACAACGCTGCAATAGCGGGTAGTTTCCTGTTTGAAGAAGCGAACACTTCTGCTTTTCCACATGTTATGGATGTCACGTTTTGGGGGAACGTTTACCCGACATACTATGCGCTTCCCCATTTGAAGCGATCCTCTGGTAGGATAGTGGTGACTGCCTCTGCTGCGGGATGGTTGCCGATGCCTCGGATGAGCATCTACAATGCGGGAAAAGCTGCAGTGATTAATTTCTATGATAGTCTGAGAGCAGAGGTGGGTTCTTCCGTGAGCATTACTATTGCAACACCAGGATGGATCGAGTCAGAAATGACGATGGGCAAGTTTGTCACCAAACGAGGAGAGGTGGAAGTCGACCAAGAAACTCGAGATGTGCAAGTTGGGCCTTCTTCCGTTGTCTTCACAGAAGACTGTGCGAAGGCTATCGTGGAAGGAGCGTGCAGAGGAAAGCGTTATGTGACCATCCCCATGTGGTATAATGTCATCTTTCTATACAGGATTTTGGCCCCTGAACTGCTACAATGGGTATTCTACATTTTCTTTGTCAAGAAAACTTCTACACCAGGCTGGAAGCAACAACCGCTCACGAAGGCGGTTCTGGATGCAACGGGGGCAAAGAAGCTTTTGTACCCCTCTTCGATCCAGTCTCAACCCCAGTCCCAGTCACAGTCCCAGTCCCCTCTGAGCACCAAATCAGACTAG___AGACGGTCCCAGTCCGCTCGGAGCACCGAATCAGGCTAGAGACGATCAATCCAATATCCGTGACTACTTTTAGCTAATAAATTACAGACCTTTTGTTGATGGTCAGATCCTTTTAGGGTTCAAAGGATTCCATGCTTGTGCCACCTCCCGCCAGAAAAACTGAGATGAGAATAAAGATGGGTGAAGTAATATATATATATATATATATATATATTTGTAAATGAGAGGATTTTGCGTATATAAATTTCTGCGCGTAAATATATGTCTGTATTTTTCCTCTTAATAAATGAGTTAAGAGTTTTGTCATTGATCTAAAAAAA

Fln Alignment:

Contig21555___PLALMRMLYWSYHLIFR-------ENMRGKTVLITGASSGIGEQMAYCYAKKGANLMLVARREERLKAVADKSRSLGAKNVHVIAADVTKEEDCKRFIDETVNLYGCLDHLVNNAAIAGSFLFEE-ANTSAFPHVMDVTFWGNVYPTYYALPHLKRSSGRIVVTASAAGWLPMPRMSIYNAGKAAVINFYDSLRAE-VGSSVSITIATPGWIESEMTMGKFVTKRGEVEVDQETRDVQVGPSSVVF------TEDCAKAIVEGACRGKRYVTIPMWYNVIFLYRILAPELLQWVFYIFFVKKTSTPG
Q0GJJ3_______________PLLLMLPSAISFCKLFRMFIITRPERVRGKVVLITGASSGIGQHMAWEYAKRGANLVVVARRRNRLEEVAKECKAYGAQYAVVCPADLTKPQDCKRIVEFTVSTFGRLDVLVNNAGTAGGSLFEEYENAAEYKRIVDIDFWGHVNTTHFALEHLQRRRGQIVVISSMIAFLPFPFTTVYSAAKGALLNFFETLRIELISKSVTVTIASPGFIQSELTS-------------------REGPGKLPWWFPMARTEDAAREIVEAALRKERDVITPRWYSSLLWFRILCPEILEWVPRVFILGQAPTRG

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
943	86		13		0.999973
1072			88	11	0.999952
1077		11		88	0.999952
1113	71	28			1.0
1145		94	5		0.998744
1373	43		6		1.0
1374			5	58	1.0
1459		44		55	1.0
1495		25		75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
1371	1396	AT AT AT AT AT AT AT AT AT AT AT AT AT	26

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain