SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21541

Length: 1547 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Basic 7S globulin 2 small subunit, putative n=1 Tax=Ricinus communis RepID=B9RTU6_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	66%
Blast2go	basic 7s globulin 2 precursor small	-	-	57%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase A1	IPR001461	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LN22

Fln msg:

Fln protein: MPLFILRLVLIAALIVGFSRLPANASKKPPTALVTPISYDSRSTNYTVEIGQRTPMRVLQLMLDIEQDYMWVSCDEKNYSSSTYRPVPCSSTLCKSYQHSRCANCYGPRGPGCNYHTCAVPYPGFQLGQDTAALLSSDGSSSGPVARIRRIAFACAAKGNLSALPRKAAGVAGMSSSILALPAQLFAAERFSRKFAMCLPGGQEPGVLSFGGGPLVFVSPAGVDLSSGLIRTPLIKNSVYSSAFYIGVQSIEVNGVDVPIDADKLRIGTEGRGGTKLSTVVRYTQLATPIYNSLVGVFTNVAKKMNITPVASVAPFGACFNLSGVAFTHLGPAVPTINLVLQGNGSSTVWSIFAVNSMVGIKSKVSCLGFVDGGEDSTASIVIGTYQMQDNLLQFDLANSTLGFSSSLYLKQTSCFNFNFTTSL*

Protein Length: 426

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGGGCGTCGTGACCTTGGCTGTCACTCAAGCGCTCTCAGATTAACCAGCAATTTGTCGGGCCTCTGTGGGCAAGCTGTCTGTGCGCACATGTCTGCCAATATAGCTGGAGCCTATTTATTGCGCAAATTAGATCCATCCTAATATTAGCAGCTTTACAAACTAATCTGATCTTTCATCAACACA_-_ATGCCTTTATTCATTCTCCGTCTCGTCCTCATTGCCGCTCTCATAGTTGGCTTCAGTCGATTGCCCGCAAATGCTTCCAAGAAGCCCCCGACGGCTCTCGTCACGCCCATCAGTTATGATTCTCGGTCGACGAACTACACCGTGGAAATTGGCCAGAGAACCCCTATGCGGGTCCTGCAACTAATGCTAGATATCGAGCAAGACTACATGTGGGTGTCCTGCGACGAGAAAAATTACAGTTCCTCTACTTACCGCCCGGTCCCCTGTAGTTCGACGCTATGCAAGTCGTATCAGCATTCCCGCTGCGCCAACTGCTATGGCCCCCGCGGCCCCGGCTGTAACTACCACACCTGTGCCGTGCCCTACCCAGGCTTCCAACTCGGGCAGGACACCGCGGCGCTTCTCAGCAGTGACGGTTCAAGCTCCGGCCCCGTTGCCAGGATCCGCCGCATCGCCTTCGCCTGCGCCGCCAAGGGAAATCTCTCCGCTTTGCCTCGAAAGGCCGCGGGCGTCGCTGGGATGAGCTCTTCCATACTAGCACTGCCAGCTCAGCTATTCGCTGCGGAGCGTTTTAGCCGCAAGTTTGCCATGTGTCTTCCAGGTGGCCAAGAACCGGGTGTTCTCTCATTTGGCGGTGGGCCGCTCGTCTTCGTTTCGCCAGCTGGTGTAGACCTATCCAGCGGCCTCATCCGCACTCCCTTGATCAAGAATTCCGTCTACAGCAGCGCCTTTTATATCGGTGTTCAGAGTATAGAAGTCAACGGAGTCGACGTCCCTATCGACGCAGATAAGTTGCGAATTGGCACGGAGGGACGTGGGGGCACCAAGCTGAGCACCGTGGTGCGCTACACACAACTCGCGACCCCCATCTACAACTCCCTCGTAGGCGTGTTCACCAACGTGGCTAAGAAAATGAATATTACGCCCGTTGCCTCCGTGGCCCCCTTCGGAGCCTGTTTCAACCTGAGTGGTGTGGCTTTTACTCATCTTGGTCCGGCTGTGCCGACGATAAACCTCGTGCTGCAGGGCAACGGTAGTAGCACTGTTTGGAGTATCTTCGCAGTTAACTCGATGGTGGGGATCAAGAGCAAGGTGTCCTGTCTAGGTTTTGTTGATGGAGGGGAGGATTCAACTGCATCGATTGTGATAGGGACGTATCAGATGCAGGATAATCTGCTCCAATTCGATCTGGCCAACTCCACACTCGGCTTCTCCTCCTCTCTGTACTTGAAACAAACATCATGTTTCAACTTTAATTTCACAACTTCTTTGTGA___AGACTCCTTTCACAGGAGTTATTGCAATAAGAATAAGAATAAATGCCATGTTCGCTTGAC

Fln Alignment:

Contig21541___FSRLPANASKKPPTALVTPISYDSRSTNYTVEIGQRTPMRVLQLMLDIEQDYMWVSCDEKNYSSSTYRPVPCSSTLCKSYQHSRCANCYGPRGPGCNYHTCAVPYPG---FQLGQXXXXXXXXXXXXXXPVXXXXXXXXXXXXKGNLSALPRKAAGVAGMSSSILALPAQLFAAERFSRKFAMCLPGGQEPGVLSFGGGPLVFVSPAGVDLSSGLIRTPLIKNSVYSSAFYIGVQSIEVNGVDVPIDADKLRIGTEGRGGTKLSTVVRYTQLATPIYNSLVGVFTNVAKKMNITPVASVAPFGACFNLSGVAFTHLGPAVPTINLVLQGNGSSTVWSIFAVNSMVGIKSKVSCLGFVDGGEDSTASIVIGTYQMQDNLLQFDLANSTLGFSSSLYLKQTSCFNFNFT
B8LN22_______________FCHLPANASQRRPRALVTQITQDPASQRYTVEIRQRTPLRIQRLVLDIEEDYMWVRCDNKSYISSTYSPLGCSAQLCKSYQYSGCGTCYGSRGPGCNNNTCVVAVQGSRSVELAQDVLVLPSSDGSNPGPLARFPQLAFACDLSSN--RVISGTVGVAGMTSSTLALPSQLSAAEGFSRKFAMCLPSGNAPGALFFGDEPLVFLPPPGRDLSSQIIRTPLIKNSVYTDVFYLGVQRIEVGGVNVAIDAEKLRFDKDGRGGTKLSTVVRYTQLASPIYNSLEGVFTSVAKKMNITRVASVSPFGACFDSSGVGSTRVGPAVPTIDIVLQGN-STTTWRIFGANSMVRVNNKVLCLGFVDGGDNLQQSIVIGTYQMQDNLLQFDLATSTLGFSSSLLFGQTTCSNFNFT

SNPs (tot: 88)

Position	A %	C %	G %	T %	Probability
145			12	87	0.992554
151			87	12	0.992554
152		90	10		0.90298
153	70		20	10	0.999998
154	70	10		20	0.999998
155	80	20			0.999996
156		10	20	70	0.999998
159		10	90		0.90298
164	80			20	0.999996
166		80	20		0.999996
169	80		20		0.999996
170	80			20	0.999996
171		20		80	0.999996
174	20			80	0.999996
181			18	81	1.0
183		17		82	1.0
184	82		17		1.0
185		82		17	1.0
186	82		17		1.0
188	82	17			1.0
191	82			11	0.999919
192	82		17		1.0
193			17	82	1.0
200	17			82	1.0
201		11		88	0.999952
220		11		88	0.999952
234		88		11	0.999952
470		13	86		0.999973
471			86	13	0.999973
474		86	13		0.999973
531		10	90		0.90298
555	23			76	1.0
565			75	25	1.0
567		25	75		1.0
568		75	16		0.99999
699		88		11	0.923564
763		85		14	0.993533
764	85	14			0.993533
910		83	16		0.994512
911		83	16		0.994512
915		16	83		0.994512
925		16		83	0.994512
931			14	85	0.993533
932	80			20	0.995493
933		80	20		0.995493
937	80	20			0.995493
938			80	20	0.995493
939		80		20	0.995493
941		80	20		0.995493
944			20	80	0.995493
946		20		80	0.995493
949	80	20			0.995493
952	20		80		0.995493
1029		16		83	0.994512
1030		16	83		0.994512
1032			83	16	0.994512
1034	16		83		0.994512
1038		83		16	0.994512
1039	83			16	0.994512
1040	83		16		0.994512
1044	16		83		0.994512
1046			83	16	0.994512
1069	14	85			0.993533
1074		71		28	1.0
1080		85		14	0.993533
1081		85		14	0.993533
1082	85		14		0.993533
1083			14	85	0.993533
1086	85		14		0.993533
1087		85		14	0.993533
1088	85	14			0.993533
1093	14	85			0.993533
1135		14		85	0.993533
1136	85			14	0.993533
1140		85	14		0.993533
1148			26	73	1.0
1149		73		26	1.0
1154	26		73		1.0
1159		73	26		1.0
1160		73	26		1.0
1166	6		75		1.0
1167	18	6	75		1.0
1168	75	18		6	1.0
1169		6	75	18	1.0
1171	18	81			1.0
1205		87	12		0.999964
1253	87	12			0.999964
1257		12	87		0.999964

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain