SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21538

Length: 1156 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21538

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	83%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	83%
Blast2go	sucrose synthase	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Sucrose synthase	IPR000368	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Glycosyl transferase, family 20	IPR001830	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Trehalose-phosphatase	IPR003337	-	-
Sma3	Sucrose synthase, plant/cyanobacteria	IPR012820	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Distance to subject end: 567 aas, your sequence is shorter than subject: 265 - 833

Fln protein: MVAATLTRALSSRERVQDTLSEHRNEIVSLLSRYVAQGKKILHPHHLLDGLAEIIGEDNELHKLRDGPFGDVLRSTQEAIILPPWVVLAVRPRPGVWDYVRVNVDELAVEQLSVAEYLEFKEHLVNGSDKDNYVLELDLEPFNASFPRPTQPSSIGSGVQFLNRHLSSRLFHDKESMQPLLDFLRAHNYRGQKLMLNERIQSLPKLRSALVKAEEHLNKFPLNTPYTKFEHKLQEMGLEKGWGDNVEHVLDMIRLLLEILQAPDP

Protein Length: 266

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTCTTGCAAACGCATCTCCGCGGTCATTATAATTGCCCTACTCCCATCGTCTTTTCCTTGGTTGTTACTCAATCGATTCTGTGTCCTGCAATTATGATCTCTTGTTTCTCTTGAAGGCGTTACTGTTAATTTATTAAATTCTCTGAAAGCTCTCTGCTTTTATATTTCCTGAAGTTTCAGGAGCCTATTGTTATTCCATTGTGCACAGAACTGAAATTCTGTCATCAGAGGATCAATCAGGATTCTGAGAAGGCTAGTGTCTAAGTGCAAATAGCAAGCTAAATCTTTTTATCGTTTGGCGCCATTGGCATACATCCAGAGGCAGAGGCAAAT_-_ATGGTTGCTGCAACGCTGACCCGTGCTCTGAGCTCTCGAGAGCGTGTTCAGGACACGCTTTCTGAGCATCGCAATGAAATAGTTTCTCTGCTTTCAAGATATGTAGCACAAGGGAAGAAGATTTTGCACCCTCATCATCTATTAGATGGACTAGCAGAGATAATAGGAGAGGATAATGAACTTCACAAACTCCGAGATGGGCCATTTGGAGATGTGTTGAGGTCCACACAGGAGGCCATTATTCTTCCACCATGGGTTGTTCTTGCTGTACGACCAAGGCCTGGTGTGTGGGATTATGTTCGTGTCAATGTTGATGAACTTGCCGTTGAACAGCTTTCTGTAGCTGAATATTTGGAATTCAAGGAACACCTTGTGAATGGAAGTGACAAGGATAACTATGTATTGGAGCTAGACCTTGAACCTTTCAATGCATCCTTTCCTCGCCCAACACAGCCATCTTCCATTGGTAGTGGAGTTCAATTTTTGAATCGACATTTGTCCTCAAGACTATTCCATGATAAAGAAAGCATGCAGCCCTTGCTGGATTTCCTTCGAGCACACAACTACCGAGGCCAGAAGCTGATGCTGAATGAGAGGATACAGAGTTTGCCCAAGCTACGCTCAGCCTTGGTAAAGGCAGAAGAACATCTTAACAAGTTCCCCTTGAATACACCATATACAAAATTTGAACACAAACTACAAGAAATGGGATTGGAAAAAGGATGGGGAGACAATGTAGAACATGTGTTGGATATGATTCGTTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATC

Fln Alignment:

Contig21538___MVAATLTRALSSRERVQDTLSEHRNEIVSLLSRYVAQGKKILHPHHLLDGLAEIIGEDNELHKLRDGPFGDVLRSTQEAIILPPWVVLAVRPRPGVWDYVRVNVDELAVEQLSVAEYLEFKEHLVNGSDKDNYVLELDLEPFNASFPRPTQPSSIGSGVQFLNRHLSSRLFHDKESMQPLLDFLRAHNYRGQKLMLNERIQSLPKLRSALVKAEEHLNKFPLNTPYTKFEHKLQEMGLEKGWGDNVEHVLDMIRLLLEILQAPDP
A6N837_______________MVAAAITHALSSRERVEDMLSEHRNEIVSLLSRYVAEGKKILQPHQLLDGLEEVIGKNVELESLRHGLFGEVLRSTQEAIVLPPWIALAVRPRPGVWEYVRVNVDELAAEQLSVAEYLEFKEHLVNGSVKDDYVLELDFEPFNASFPRPTRPSSIGSGVQFLNRHLSSRLFRDKESMQPLLDFLRAHKYRGQKLMLNERIQSLPGLRSALVKTEEHLKKFPKDTPYAEFEYKLQELGLEKGWGENAEHALDTIHLLLEILQAPDP

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
746	75			25	0.996473
834	12		87		0.992554
848		12		87	0.992554
868	41		58		1.0
877		36		63	1.0
879	45		54		1.0
889	66			25	1.0
898	33		66		1.0
901	8	58		33	1.0
904		33	66		1.0
927	63		36		1.0
944		63		36	1.0
971	54			45	1.0
994	62		37		1.0
1006	42		57		1.0
1041	80			20	0.995493
1042		20		80	0.995493
1043	80		20		0.995493
1044		75		25	0.996473
1045	66		33		0.997452
1046	66		33		0.997452
1048	33		66		0.997452
1061		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain