SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21525

Length: 1356 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21525

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pathogenesis-related thaumatin-like protein [Arabidopsis thaliana] gb\|ACF20472.1\| At5g24620 [Arabidopsis thaliana] gb\|AED93335.1\| pathogenesis-related thaumatin-like protein [Arabidopsis thaliana]	-	-	9.0e-20	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	thaumatin-like protein	-	-	0.0	51%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEF8

Fln msg:

Fln protein: MVGSRSSDQLTIAARAAIFLVTFTSFLCSCAAESPAAYKTISVANNCAFPVWPATVGSTNFPPTQMNKVGAGESFSWNVDPFWSGSIWGRTGCVFNSQGIGGCDSGDCGGKLQCKDESQDQITAITKAEFELLGGIAKPDTYSVTLENGYNLPMSVVPSYAANNVSNSRPCESMECRANADVVCPKDLQEKKKGSVVTACNGHFDGYLPSSPAFKEAFKKACPRAFPFQSSTICPPSTASYTLIFCPRRPSP*

Protein Length: 254

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTCTATTTCTATCTATTTGCTTGCAGAGATTTCAAATTGCGGTTATTTGTGAAGTTGCCAGTAACCAAAAATTAGACGCAGTAAGTTCTCCTTCAATCTTTGTACGCTGATATTAAAAATATTGGCGTGACATCTTCACTGCAGAGGCAAATTCAGGGAAGTCTGTGCATTTACATTTTGGTGTTATAGAGACTGTTATTACAACTAGTCTCCAAC_-_ATGGTGGGAAGTCGAAGCAGCGACCAGTTAACAATAGCGGCACGGGCAGCTATATTTCTTGTTACATTTACGTCTTTTCTTTGTTCTTGCGCTGCAGAGTCACCTGCGGCTTATAAGACGATAAGTGTGGCGAACAATTGTGCATTTCCGGTGTGGCCTGCGACTGTGGGTTCAACTAATTTTCCTCCCACTCAGATGAATAAAGTGGGAGCAGGGGAGTCATTTTCATGGAACGTAGATCCATTCTGGTCGGGATCCATTTGGGGGCGGACTGGTTGTGTCTTCAATTCCCAAGGGATCGGAGGCTGCGATTCCGGTGATTGTGGAGGAAAGCTGCAGTGCAAAGACGAGAGTCAAGATCAAATCACGGCAATCACAAAAGCTGAGTTCGAACTTTTGGGAGGAATAGCAAAACCAGACACGTATTCGGTTACGTTGGAGAATGGTTACAATCTTCCAATGTCGGTGGTTCCAAGTTATGCCGCCAATAATGTCAGTAACAGTCGGCCCTGTGAGTCGATGGAGTGCAGAGCCAACGCGGATGTGGTTTGTCCGAAAGATTTGCAAGAGAAGAAGAAAGGGAGCGTGGTTACTGCGTGCAACGGTCATTTCGATGGATATTTGCCGAGTTCGCCCGCGTTCAAAGAGGCATTTAAGAAGGCGTGTCCTCGTGCATTCCCCTTCCAAAGTAGCACCATATGCCCTCCTTCCACGGCTTCCTACACCCTCATCTTCTGCCCTCGCCGTCCATCACCCTGA___ATACTTAATGCATGAGTTTTCTAAGTTTAGTTCCGTTGGGCTTGGCTTCTCTGGTTCAATCGTTCTACCGCAAGGCATTTCGGAATTTTGTGTGCACGAATCGCAAATTCAGAGGTTGCATTACTTAGGTATGATTGCAAATAGTGATTGGTGCATAAGGGAGGATGCATAGTTCTTTAGTTCCCATTTTTGTCTTCAGTGCACAGCATTTTGTTTCAGTAGACAGGTTTTGTTTTTCGGGCGTCAAAAACCCATCCCCAAGCGAAATATTGTACACTGCACACTGCTTTTTGCATTTTCAAAAAGTAATTCTTCAGCGTCAATGAATCGATGTTTCAGAACTAGCAACAAGAC

Fln Alignment:

Contig21525___MVGSRSSDQLTIAARAAIFLVTFTSFLCSCAAESPAAYKTISVANNCAFPVWPATVGSTNFPPTQMNKVGAGESFSWNVDPFWSGSIWGRTGCVFNSQXXXXXXXXXXXXKLQCKDESQDQITAITKAEFELLGGIAKPDTYSVTLENGYNLPMSVVPSYAANNVSNSRPCESMECRANADVVCPKDLQEKKKGSVVTACNGHFDGYLPSSPAFKEAFKKACPRAFPFQSSTICPPSTASYTLIFCPRRPS
D5AEF8_______________MVGSRSSHQLTMTAWISMFLVTFTYFLCLSAAESPMVYKTIRVVNNCAFPVWPATVGSTDLPPPQMRKVRAGESYSWKADPFWSGSIWGRTGCVFNSQGIGGCDSGDCGGNLQCKDESH--IMAITKAEFELLGGIAKPDTYSVTLEKGYNLPMSVDPSYAANNISSSRPCESMECTANANVVCPKNLQEKKKGSVVTACNGHYDGYLPSSPAFSKAFQKACPRAFPFRSGTICPPSTASYTLTFCPRRPS

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
38	75	25			0.996473
39			25	75	0.996473
41		25		75	0.996473
42	75		25		0.996473
44			25	75	0.996473
45	25			75	0.996473
46		25		75	0.996473
52	75			25	0.996473
54	75			25	0.996473
55		25	75		0.996473
57		25		75	0.996473
59		25		75	0.996473
60	14	85			0.993533
70		57		42	1.0
85		42		57	1.0
98	71		28		1.0
106	28	71			1.0
174	28		71		1.0
175		71	28		1.0
181	14	85			0.993533
242	50			50	1.0
273	60	40			1.0
279	60		40		1.0
286		20		80	0.995493
301		75	25		0.996473
309	50		50		1.0
925		87		12	0.992554
1008	12		75	12	0.975346
1014		12	87		0.992554
1037		84		15	1.0
1046	52			47	1.0
1056	52		47		1.0
1072		50		50	1.0
1073	50		50		1.0
1098		52		47	1.0
1123	50		50		1.0
1131	50		50		1.0
1150	26		20	53	1.0
1151			53	46	1.0
1162			41	58	1.0
1187	44	55			1.0
1229			25	75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain