SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21493

Length: 1369 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21493 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative esterase [Oryza sativa Japonica Group]	-	-	69%
FL-Next	sp=GDSL esterase/lipase At5g62930; Arabidopsis thaliana (Mouse-ear cress).	-	-	65%
Blast2go	gdsl esterase lipase at5g62930-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-
Sma3	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FM04

Fln msg:

Fln protein: MMCPQFVLFGDSITEQSFRPGGWGSALADSYSRKADVVLRGYGGYNTRWALFLLDKIFPLQSSKPPLVVTVFFGANDAALLGRSNERQHVPLIEYKENLHRIITHLKNCSDSMLVVLITPPPVDENGRSQYARATYGENAVELPERTNETAGTYAKSCIQVAIESGVPVIDLWSKMQETVGWQQKYLSDGLHLTPEGNALVFEELLKILSERGLNVDDMPDDFPHHSIIDDKDPQKSFQGRE*

Protein Length: 244

Fln nts: ATGGGGACAAGCGAATAATTACCTTTTCTACAGTCACAAAATATCAGGAATTTGCTAGATTATATAATTCGACAATCTCCAATCCAGTTGTGCCCAAAGAAAAAGGCCCAACGGAGTCCCAATCAGTGATCAGCGTCGTTGCC_-_ATGATGTGCCCACAATTTGTACTGTTCGGAGACTCCATCACTGAACAGTCGTTCAGGCCCGGTGGATGGGGATCAGCTCTTGCTGATTCCTACTCTCGCAAGGCTGATGTTGTTTTGCGGGGATACGGTGGCTACAATACACGATGGGCTCTGTTCCTTCTCGACAAGATCTTCCCCCTCCAGTCTTCTAAGCCACCATTAGTGGTGACAGTTTTCTTTGGAGCCAATGATGCAGCTCTCCTAGGGAGGAGTAATGAGCGGCAGCATGTGCCTCTTATAGAGTACAAGGAGAATCTTCATCGGATCATAACTCATTTGAAGAATTGTTCGGACTCGATGCTGGTAGTGCTAATCACACCCCCCCCGGTGGATGAAAATGGCCGCAGCCAGTATGCAAGAGCTACCTATGGAGAGAATGCCGTTGAGCTGCCAGAACGTACTAATGAAACCGCGGGGACTTATGCCAAATCTTGTATACAAGTTGCAATTGAGTCTGGGGTTCCGGTTATTGACTTGTGGTCAAAAATGCAGGAAACTGTGGGCTGGCAACAAAAATATTTGAGTGATGGTTTACACCTCACTCCGGAGGGTAATGCACTTGTCTTTGAAGAGTTGCTCAAAATACTCAGTGAAAGAGGTTTGAATGTCGATGACATGCCAGATGATTTTCCTCATCATTCTATTATTGATGACAAGGATCCACAAAAATCATTCCAGGGCAGAGAATGA___TTGGCCATTTTTCAACTCACAGTATGCCATTCATGAAACTACAATTATGATGGTGTGATCAATTTTACTTTCTAGTAGCTAATATATATTTATTCTGGTCTAAAACGCATCTTGCTGATTTGGCTCTTATTAGACATCAGCAGACTTCGTATCTTACATTAAAATAAGTATTCCAAAGCAAAACGAAATAGCACTTTTTCTCCAACTGCTATGACTTTTGCCGTTGACATTATTTCTAAATTTGTCGAAGTTGCTTCATAGTTTTCTTTCTACGGTTGGCCTGGAAGGGCTGATTCCCCTGTTTCCGTATTTACGGCAATGACAATTTTATTGTCCACTAACAATGATATAGTTTTAATTGTAAGGGTTTCTTTGTTTAGATGTCGAGGATCTGTGAGAAAATATATTCAGCAGACCGATTTGAAAATGAACGAGAGTACTATGATTGTTGGTGATGAAATGATATGGCAGTGGAAAAATGAGTTATCAATAAACTT

Fln Alignment:

Contig21493___MCPQFVLFGDSITEQSFRPGGWGSALADSYSRKADVVLRGYGGYNTRWALFLLDKIFPLQSSKPPLVVTVFFGANDAALLGRSNERQHVPLIEYKENLHRIITHLKNCSDSMLVVLITPPPVDENGRSQYARATYGENAVELPERTNETAGTYAKSCIQVAIESGVPVIDLWSKMQETVGWQQKYLSDGLHLTPEGNALVFEELLKILSERGLNVDDMPDDFPHHSIIDDKDPQKSFQGR
Q9FM04_______________MRPEIVLFGDSITAQSFRSGGWGSALADAYSRKADVVVRGYGGYNTRWALFLLHHIFPLGSSSPPVATTIFFGANDAALKGRTSDRQHVPVEEYTDNVRKIVQHLKKCSPTMLIVLITPPPIDEAGRQSYAESIYGEKAMKEPERTNETTGVYAQHCVALAEELGLRCVNLWSKMQETNDWQKKYLSDGLHLTPEGNGVVFDEVSRVFREAWLSPEEMPFDFPHHSHIDGKNPSKAFEER

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
417	90		10		0.90298
422		90		10	0.90298
423			10	90	0.90298
429	90	10			0.90298
431	90		10		0.90298
434	90	10			0.90298
435	90			10	0.90298
437	90		10		0.90298
439		10		90	0.90298
442			11	88	0.923564
443		88	11		0.923564
453		11	11	77	0.968132
454	88		11		0.923564
455	88	11			0.923564
456		11	11	77	0.968132
457			12	87	0.992554
617		75		25	0.996473
618			25	75	0.996473
619	25	75			0.996473
620			25	75	0.996473
622		75	25		0.996473
624	75	25			0.996473
627	75	25			0.996473
632			25	75	0.996473
633			75	25	0.996473
636		25		75	0.996473
637			25	75	0.996473
640		75	25		0.996473
652		33	66		0.997452
653	33		66		0.997452
654			33	66	0.997452
655		33	66		0.997452
656		33		66	0.997452
659	66		33		0.997452
660		66	33		0.997452
663		33		66	0.997452
664		66	33		0.997452
667			33	66	0.997452
824			87	12	0.992554
829		87	12		0.992554
830	12			87	0.992554
832	12			87	0.992554
833			12	87	0.992554
834		12	87		0.992554
837	12			87	0.992554
838	87		12		0.992554
839		87	12		0.992554
841		12	87		0.992554
842	12		87		0.992554
844			12	87	0.992554
845	12		87		0.992554
904	80		20		0.995493
906	20			80	0.995493
907		20		80	0.995493
1023	87		12		0.992554
1049	87		12		0.992554
1050	12		62		1.0
1072	14		85		0.999981
1190	88		11		0.999952
1255		61		38	1.0
1279		50	50		1.0
1280	50	50			1.0
1281		50	50		1.0
1283	50			50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain