SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21463

Length: 1135 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21463

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Ammonium transporter 1 member 2; AltName: Full=LeAMT1;2 emb\|CAA64475.1\| ammonium transporter [Solanum lycopersicum]	-	-	1.0e-21	67%
FL-Next	sp=Ammonium transporter 1 member 2; Solanum lycopersicum (Tomato) (Lycopersicon esculentum).	-	-	0.0	67%
Blast2go	ammonium transporter	-	-	9.61818e-24	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	9.61818e-24	74%
Blast2go	methylammonium transport	GO:0015843	Biological Process	9.61818e-24	74%
Blast2go	ammonium transmembrane transporter activity	GO:0008519	Molecular Function	9.61818e-24	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.61818e-24	74%
Blast2go	ammonium transmembrane transport	GO:0072488	Biological Process	9.61818e-24	74%

Source	InterPros	Term	Type	Identity
Sma3	Ammonium transporter	IPR001905	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3		IPR010256	-	-
Sma3	Ammonium transporter, conserved site	IPR018047	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
425		93	6		0.999453
426	6			93	0.999453
427		6		93	0.999453
429			93	6	0.999453
437		6		93	0.999453
466		93	6		0.999999
467	6		6	86	0.999966
468		6		93	0.999999
470	86			13	1.0
471	86		6	6	0.999966
472	93		6		0.999999
473		6	93		0.999999
478			6	93	0.999999
480	6			93	0.999999
481		6	6	86	0.999966
485		6	93		0.999999
510			10	90	1.0
511		10		90	1.0
519		92		7	0.999602
624	91	8			0.999766
936		80		20	0.995493
1023			75	25	0.996473
1025			25	75	0.996473
1033	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain