SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21438

Length: 1225 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21438 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase subunit n=2 Tax=Papilionoideae RepID=Q2HU21_MEDTR	-	-	87%
FL-Next	sp=DNA-directed RNA polymerase subunit; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	27%
Blast2go	dna-directed rna polymerase ii kda polypeptide	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	binding	GO:0005488	Molecular Function	92%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	92%
Blast2go		GO:0080137	Cellular Component	92%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase M, 15kDa subunit, conserved site	IPR019761	-	-
Sma3	DNA-directed RNA polymerase, M/15kDa subunit	IPR001529	-	-
Sma3	Zinc finger, TFIIS-type	IPR001222	-	-

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
812	66	33			0.997452
969		15	84		0.999986
1058	41		41	17	1.0
1061	76	23			1.0
1076		33		66	1.0
1096		23		76	1.0
1103		60		40	1.0
1104		40	60		1.0
1108		40	60		1.0
1113			90	10	0.90298
1117	40		60		1.0
1120		33	66		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain