SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21412

Length: 903 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21412 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative esterase [Oryza sativa Japonica Group] gb\|EAY73022.1\| hypothetical protein OsI_00894 [Oryza sativa Indica Group]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	gdsl esterase lipase at5g45910-like	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Lipase, GDSL	IPR001087	-	-
Sma3	Lipase, GDSL, active site	IPR008265	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWB0

Fln msg: STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 301 - 388

Fln protein: RKATGRYSDGRLIVDYIAKACAMQLREPHLRVRNTSRVAATGVNFAVAGATALKADFFKVRNIGPLLTPYSLDIQINWFLTQKRKICDNYRDCDKHFANALFLMGEIGGNDYNYPFFQGRSMKEVHTFIPLVVEKIAKALKTLITVGGARKILVQNNLPIGCSPSYLTLYASASSRNGEPLDKLWCLRRFNNFARKGNNLLRARVAQLQFQHSEVKFVFADLYGAALNVLKSPQSFGLQKNILRTCCGVGGRYNFNLSMWCGVGRAVACANPQQCFNWDGVHLTDAAYGNIAKLFLDGNFT

Protein Length: 302

Fln nts: CGCAAAGCAACAGGCCGGTACTCAGATGGGCGATTGATCGTAGATTACATCGCGAAAGCTTGCGCGATGCAATTACGAGAACCACATCTGAGGGTAAGAAATACTTCAAGAGTCGCCGCCACTGGTGTTAACTTCGCAGTGGCTGGAGCCACAGCCTTGAAGGCTGATTTCTTCAAAGTGAGGAATATAGGGCCGCTTTTGACGCCGTATTCACTGGATATTCAGATTAATTGGTTTCTAACGCAAAAACGCAAGATATGTGACAACTACCGAGACTGTGACAAGCATTTTGCGAATGCGTTGTTTCTGATGGGGGAGATCGGCGGAAACGATTACAACTATCCATTCTTTCAGGGTCGGTCAATGAAAGAAGTGCATACCTTCATCCCTTTAGTAGTGGAAAAGATCGCAAAAGCGCTCAAGACACTCATTACAGTGGGCGGCGCAAGGAAGATTTTAGTTCAGAATAACTTACCCATTGGCTGTTCGCCGTCATATTTAACTCTATATGCTTCAGCTTCATCTCGAAATGGAGAACCACTGGACAAATTGTGGTGTCTGCGTCGGTTCAACAATTTCGCCAGGAAAGGCAATAATCTTCTCAGAGCGCGAGTTGCACAATTGCAGTTTCAACATTCAGAAGTTAAATTTGTGTTTGCAGACCTTTACGGAGCGGCCCTCAACGTTTTAAAGTCTCCACAGTCCTTCGGGCTGCAGAAAAATATCCTACGGACATGTTGTGGAGTTGGTGGTCGATATAATTTCAATCTGAGTATGTGGTGCGGGGTAGGACGAGCAGTTGCATGCGCAAATCCTCAACAATGCTTCAATTGGGATGGTGTTCATTTGACGGATGCCGCTTACGGAAATATAGCCAAATTGTTTCTGGACGGGAACTTCACA

Fln Alignment:

Contig21412___KATGRYSDGRLIVDYIAKACAMQLREPHLRVRNTSRVAATGVNFAVAGATALKADFFKVRNIGPLLTPYSLDIQINWFLTQKRKICDNYRDCDKHFANALFLMGEIGGNDYNYPFFQGRSMKEVHTFIPLVVEKIAKALKTLITVGGARKILVQNNLPIGCSPSYLTLYASASSRNGEPLDKLWCLRRFNNFARKGNNLLRARVAQLQFQHSEVKFVFADLYGAALNVLKSPQSFGLQKNILRTCCGVGGRYNFNLSMWCGVGRAVACANPQQCFNWDGVHLTDAAYGNIAKLFLDGNFT
A9NWB0_______________KPTGRCSNGRLIVDFIAQAYGFQFLPPFL---DKHADFSNGANFAVAGATAMDASFFEERHIEPIFTNFSLDTQIEWFKTFKENYCYGTPDCADHFENALFLIGEIGGNDYNYPFAQGRSLEEVSTFVPLIVQKIKGAIEELID-EGAKKFFVQGNLPIGCSPFYLTTQQTNSSAD---LDHMGCLVKFNNFSQYSNLHIRNMLLDVQGKHQNISIIYADYFSAALKVLSNPKQYGLQRNVLRVCCGRGGKYNFSPPTSCS-PNVSSCLNPEQYFNWDGVHLTETAYRTIAKMFVDGKFT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain