SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21385

Length: 1734 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21385 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome P450 [Solanum lycopersicum]	-	-	57%
FL-Next	tr=Cytochrome P450 90A20; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	cytochrome p450	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	brassinosteroid biosynthetic process	GO:0016132	Biological Process	0.0	72%
Blast2go	skotomorphogenesis	GO:0009647	Biological Process	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Bacterioferritin	IPR002024	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Cytochrome P450, B-class	IPR002397	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM7

Fln msg: your sequence is shorter than subject: 433 - 487

Fln protein: WGWPLLGGTLPFLKPHPSTSTGPFLHQRVQRFGRVFKSHLFGEPAIVSCDPDLNAYVLQNEDRLFQCSYPTAIHGILGEMSMLVVVGDAHKRLRTLALSLVNAAKTNPNFLSDIEANALLITGKWKQKQTVLFCEEARKFTFTVIVKQILSLKPDSPETSTILKDFLTFMKGLASLPLYIPGTSYAKAVKSKSQILSTLKTLVDRRRNEGIQRGDFLDMLLTSTSLGDDEILSLVLDLLLGGYETTAILIAMVVKFLTDCASAFQQLKSEHEKIRRGKQKGEAGLNWDDYRQMSFTQNVINEALRCGNVVKFVHRKALKDVKFKGYDIPAGWKILPMFSAVHLDSSAFKDPQEFNPWRWQTAIAGKQFTPFGGGPRLCPGSELAKVETAFFIHHLVLNFRWRAAELDHSVAYPYVEFEKGLPIHVERVCMAD*

Protein Length: 434

Fln nts: ATGGGGATGGCCGTTACTCGGAGGGACACTGCCCTTTCTTAAACCCCATCCTTCCACTTCCACAGGCCCATTTCTTCACCAACGCGTGCAACGGTTCGGAAGAGTTTTCAAGTCCCATCTATTTGGGGAGCCCGCAATTGTATCCTGCGATCCCGATCTCAATGCTTACGTGCTGCAGAACGAGGACCGGTTGTTCCAGTGCAGCTACCCCACGGCCATTCATGGAATATTGGGCGAAATGTCTATGCTTGTGGTTGTCGGCGATGCTCACAAACGATTGCGAACCCTGGCACTCAGTCTGGTTAATGCTGCCAAAACCAATCCCAACTTCCTCAGTGATATAGAAGCGAATGCACTTCTCATCACTGGTAAATGGAAGCAAAAACAGACCGTACTCTTCTGTGAAGAGGCCAGAAAGTTCACATTCACTGTAATAGTGAAACAAATTCTGAGTTTGAAGCCAGATAGTCCGGAAACATCCACCATCTTGAAGGACTTTCTTACTTTCATGAAAGGACTGGCGTCACTGCCGCTATATATTCCCGGAACATCTTACGCAAAAGCTGTCAAGTCGAAATCTCAAATTCTTTCCACCCTTAAAACGCTGGTGGATAGGAGGAGGAATGAAGGCATTCAGAGAGGAGATTTTCTTGATATGCTTCTGACAAGCACGAGTCTAGGCGATGATGAGATCCTTAGCCTGGTTTTAGATCTTCTGCTTGGAGGCTATGAAACAACAGCAATTTTAATAGCTATGGTAGTCAAATTTCTCACAGACTGCGCTTCTGCTTTCCAGCAGTTAAAGAGTGAGCACGAGAAAATCAGAAGGGGAAAACAGAAGGGTGAAGCAGGTTTAAATTGGGATGATTACAGGCAAATGTCTTTTACACAAAATGTAATCAACGAGGCACTGCGGTGTGGGAACGTGGTTAAATTTGTTCACCGGAAAGCTCTGAAAGACGTAAAGTTTAAAGGGTACGACATTCCGGCAGGATGGAAGATTCTCCCAATGTTCAGTGCTGTTCATCTAGACTCCTCTGCCTTTAAAGACCCTCAAGAGTTCAATCCCTGGAGATGGCAGACAGCGATAGCAGGAAAACAATTTACACCTTTTGGTGGAGGACCGAGGCTTTGTCCTGGATCAGAATTGGCTAAAGTCGAGACTGCTTTTTTCATTCACCATCTGGTTCTGAACTTCAGATGGAGAGCAGCTGAGCTGGATCACTCTGTTGCATATCCCTATGTGGAATTCGAGAAGGGGTTGCCAATCCACGTTGAGCGTGTGTGTATGGCGGATTAA___ATTTAGGATTCCATTTTGGTCTTTATGCATAAATAATTGTTTATGACAGCAGAAAGATGAAGGACAGCAGTCACAGCACGCTCACTCGCTCATGTGTCCTGTACTTGGGATTTCTAGCGGATCAGGACTCTGGCAACTTACATGAAGAAGTGATGATGATCCAGTGAAGGTCCCATATCGCTAATTTAATGACAGACATCATTGCATTGGTGGTCAATGGAGTCGCGATACGGATATATCAAATACAGGAAAGAATTTCTTGGGATATGTGGATTCGACAGTGAGTTCGTCGAACGTGTGTATAAAAAATTGAGCTGTCAGCTTTTTGCTTCTCCCGGATATCGCCTTTGACTGTATTTTTTAATGCAGTACAATTAGTCAAATGTACTTCAGGATTTTTCAGTATAAATACAGATTTCTGAACATTTTCTGAT

Fln Alignment:

Contig21385___GWPLLGGTLPFLKPHPSTSTGPFLHQRVQRFGRVFKSHLFGEPAIVSCDPDLNAYVLQNEDRLFQCSYPTAIHGILGEMSMLVVVGDAHKRLRTLALSLVNAAKTNPNFLSDIEANALLITGKWKQKQTVLFCEEARKFTFTVIVKQILSLKPDSPETSTILKDFLTFMKGLASLPLYIPGTSYAKAVKSKSQILSTLKTLVDRRRNEGIQRGDFLDML---------LTSTSLGDDEIXXXXXXXXLGGYETTAILIAMVVKFLTDCASAFQQLKSEHEKIRRGKQKGEAGLNWDDYRQMSFTQNVINEALRCGNVVKFVHRKALKDVKFKGYDIPAGWKILPMFSAVHLDSSAFKDPQEFNPWRWQ----TAIAGKQFTPFGGGPRLCPGSELAKVETAFFIHHLVLNFRWRAAELDHSVAYPYVEFEKGLPIHVER
A9NWM7_______________GWPLLGETLQLIAAYKTSNPEPFVDTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQNEGKLFATSYPSSITNLLGKHSLLLIQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDH--VLLQDEAKKITFELTVKQLLSFDP-GQWSENLRKEYLQLIDGFFSLPVPLPFTTYGKALKARAKVAEELRLVLKRRRDS--ESSDHYDMLAALLNEKSTTTSDGLSDDQIIDLLLSLLVAGYETTSTIMTLAVKFLTETPDALAQLKEEHEAIRKQK-PGAQRLEWSDYKSMAFTQCVISETLRIANIISGVFRRALCDVEIKGFNIPQDWLVFPCFRAVHLDQELYSDARKFNPWRWQGNHPSTSSGTVFTPFGGGPRLCPGYELARVEISVFLHHMVTLFSWEVVEEDKLIFFPTTRTVKRYPINLTR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1068			25	75	0.996473
1203		75		25	0.996473
1263		75		25	0.996473
1577	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain