SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21304

Length: 1064 nt

Origin of reads: Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21304

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kunitz_legume domain containing protein	-	-	1.0e-26	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	protein	-	-	0.0	54%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteinase inhibitor I3, Kunitz legume	IPR002160	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNR6

Fln msg:

Fln protein: MASTSARGTRRRMMLLMQMVAGAAFMLFINLPLQVQGAVETDRPNVVDAKGHPVLVGEEYYVLPAVAGSGGGLGLKLRANNSCPLYVEQQNSVKSRGLPVVFRPAQGQRVNYSSVIVQQHVNLNVNFAAVTTCVQSTEWSVGNDANTTKRFIKASDASSLFQIVKAIEGDGYNLYFCPCNCRLVCTKVGIYVDSDENRWLIIDNSAEALRVQFHKKE*

Protein Length: 219

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGATATATATATCGTTAAGCCTTGTGAGCATTTGAAGATCAATAAAAGTACAACCACAATCAGAGGAGTTGCAATCGCT_-_ATGGCTTCTACATCAGCCCGGGGAACGAGAAGAAGGATGATGTTGTTGATGCAAATGGTAGCAGGGGCTGCATTTATGTTGTTCATTAATCTACCCTTGCAGGTGCAGGGTGCTGTGGAAACGGACCGCCCAAATGTGGTTGATGCCAAGGGGCATCCTGTGCTGGTGGGCGAAGAATATTACGTTTTACCGGCTGTAGCTGGCAGTGGCGGTGGACTGGGACTGAAGCTGCGCGCGAACAACAGCTGCCCATTGTATGTGGAGCAGCAGAATTCTGTGAAATCGAGGGGACTTCCTGTGGTGTTCAGGCCTGCTCAGGGTCAGCGGGTAAACTATTCGTCCGTAATTGTGCAACAGCACGTCAATCTGAACGTTAACTTTGCCGCTGTTACTACTTGCGTTCAATCCACTGAGTGGTCTGTCGGGAATGATGCGAATACCACCAAACGTTTCATCAAAGCTTCGGACGCCTCTTCGTTATTTCAGATTGTAAAGGCGATTGAGGGAGATGGTTACAATCTGTATTTCTGCCCTTGCAATTGCAGACTTGTCTGTACCAAAGTTGGAATTTATGTTGACAGTGATGAGAACAGGTGGTTGATTATTGATAATTCGGCAGAAGCTCTGCGTGTTCAATTTCACAAGAAAGAATGA___GAGACACCGCATGCGTGTGGGTGAATAAAAACGACGTGTTGGTGTCGTTAGTGATGTATGAGCGATAAAATAATATTATCAGCAGTTTCTCTTGCATGTGGACGTCCGGAGGATGACCATGAAGTCTTTCTCTCCACTCATACGTTTAGCTATAATAAGGAGAACTTCTTCAATTAAAATTTATTATCATAATTACTTTGCCTTCACGCTTATGATTCTCTTGGTCGGCACCGTGTCCTATTTGTTTCAACGAGAGACACTAACTCACCACCTTGTCTTTGTTTAACTTTTCTATAGACTCGA

Fln Alignment:

Contig21304___MASTSARGTRRRMMLLMQMVAGAAFMLFINLPLQVQGAVETDRPNVVDAKGHPVLVGEEYYVLPAVAGSGGGLGLKLRANNSCPLYVEQQNSVKSRGLPVVFRPAQGQRVNYSSVIVQQHVNLNVNFAAVTTCVQSTEWSVGNDANTTKRFIKASDASSLFQIVKAIEGDGYNLYFCPCNCRLVCTKVGIYVDSDENRWLIIDNSAEALRVQFHKKE
B8LNR6_______________MGSTSAWGTRRTMMQMV-MVAITAFMLFINLPLQVQGAAD-----VVDAEGNPVLVGGEYYVLPAVAGSGGGLTLKMRVNNSCPLYVAQENSEKSRGLPVVLRPAKGQRGNYSSVIVQEHVNLNVNMAAVTACVQSTAWSVQNDANTTKRFIKASDSSSLFQIVKAIDGDGYVLYFCPCNCRLVCTKVGIYVDGDEKRWLVINNSGEALRVQFQKNE

SNPs (tot: 50)

Position	A %	C %	G %	T %	Probability
299		85		14	0.993533
301			87	12	0.992554
307		12	87		0.992554
313	87			12	0.992554
316		12	87		0.992554
317	12		87		0.992554
320			87	12	0.992554
321		12		87	0.992554
322	12		87		0.992554
344		90		10	0.90298
349	88	11			0.923564
350	88			11	0.923564
351		88		11	0.923564
352	88		11		0.923564
421			87	12	0.992554
423			14	85	0.993533
453	71	14			0.984337
454	85		14		0.993533
456		14		85	0.993533
458		14		85	0.993533
462	85	14			0.993533
463		85	14		0.993533
464	71			28	1.0
466		83	16		0.994512
467	71	14	14		0.984337
468		71		28	1.0
470	14			85	0.993533
472	87	12			0.992554
473	71	14	14		0.984337
481		14	85		0.993533
484	85		14		0.993533
485	85		14		0.993533
488			14	85	0.993533
490		14	85		0.993533
491	14	85			0.993533
493			85	14	0.993533
496	14		85		0.993533
512	88		11		0.923564
513	88			11	0.923564
514			11	88	0.923564
515	11	88			0.923564
517	88	11			0.923564
518		88		11	0.923564
521	88		11		0.923564
522		11	88		0.923564
525		11	88		0.923564
526	11			88	0.923564
529	11		88		0.923564
733		53		46	1.0
886	37		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain