SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21264

Length: 1075 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21264 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gb\|AAM98208.1\| mitochondrial carrier protein, putative [Arabidopsis thaliana] gb\|AAP42736.1\| At1g07030 [Arabidopsis thaliana] gb\|AEE28070.1\| Mitochondrial substrate carrier family prote	-	-	3.0e-24	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	mitochondrial rna-splicing protein mrs3	-	-	3.06954e-35	77%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Glycoside hydrolase, family 81	IPR005200	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
290			25	75	0.996473
600			16	83	1.0
606			16	83	1.0
607	88	11			0.999937
608		16		83	1.0
609	11		83	5	0.999887
610	11	70	5		0.999887
611	17		11	70	1.0
614		12	18		1.0
617	18		12		1.0
618	12		18	68	1.0
620		18	12	68	1.0
624	78		21		1.0
627		21	78		1.0
628	21			78	1.0
630		78	21		1.0
632		21		78	1.0
675	20	80			0.999996
676	70		20	10	0.999998
679		20	80		0.999996
681	70	20	10		0.999998
686			10	90	0.90298
687		10		90	0.90298
689		20		80	0.999996
690	20	10		70	0.999998
692		80	20		0.999996
703			12	87	0.992554
877		25		75	1.0
890			12	87	0.992554
891	87		12		0.992554
892	12			75	0.975346
893		75	25		1.0
903	25	75			1.0
904	75		25		1.0
905	75		25		1.0
906	75			25	1.0
910		50	12	25	1.0
911	12	50	37		1.0
912	37	12		50	1.0
914			66	33	1.0
915		66	33		1.0
917		33		66	1.0
918	33			66	1.0
921	66	33			1.0
924	33	66			1.0
930	33			66	1.0
931		33		66	1.0
959		33	66		0.997452
960	33	66			0.997452
961	33			66	0.997452
964		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain