SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21231

Length: 802 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21231

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Map3k delta-1 protein kinase, putative n=1 Tax=Ricinus communis RepID=B9RZR2_RICCO	-	-	1.96182e-44	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	pas domain-containing protein tyrosine kinase	-	-	0.0	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3		IPR000173	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	PAS fold	IPR013767	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
559	75	25			0.996473
560	75		25		0.996473
563	75		25		0.996473
566			25	75	0.996473
568		25	75		0.996473
571		75		25	0.996473
572	75		25		0.996473
573			25	75	0.996473
576		75	25		0.996473
577		75		25	0.996473
580	25		75		0.996473
581		25	75		0.996473
582	75			25	0.996473
583	75	25			0.996473
630	33			66	0.997452
722			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain