SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21188

Length: 398 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene21188
CGTCGTGACCTTGGCTGTCACTCAAGCAGGGTTTCAGTATTGGTATAGGAGACACAATTGCTGATGTTGCAACCATGGAGGTTATCAATGGCACAATAATAAAAGCAAAGAATGAAGTTAAAGCGCTTATTAGGGCTGCTCAGGAAAAACAATTAGAGGCAGAACCTGGCCGCACAATGATGGAGTCCTTTGAAAACAAAGTCAATCAGGTGTTGAACAAGGCCCGTGATGATGCAGGAAGTAGTGCTCAAAAAAGTTTATCAGAGAGTAATAACTTGAAGGCAATGGTTACAGCCGGGTCAAAAGGAAGTTTTATTAACATATCACAAATGACTGCTTGTGTGGGACAACAAAATGTAGAAGGAAAACGAATTCCTTATGGATTTGATGGTCGAACT

Ace file of the UniGene sp_v2.0_unigene21188

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=10 Tax=Spermatophyta RepID=Q2TUN6_GINBI	-	-	91%
FL-Next	sp=DNA-directed RNA polymerase II subunit RPB1; Arabidopsis thaliana (Mouse-ear cress).	-	-	79%
Blast2go	rna polymerase ii largest subunit	-	-	93%

Source	InterPros	Term	Type	Identity
Sma3	Formate/nitrite transporter	IPR000292	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	RNA polymerase, alpha subunit	IPR000722	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Ribonuclease H domain	IPR002156	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	RNA polymerase, N-terminal	IPR006592	-	-
Sma3	RNA polymerase Rpb1, domain 3	IPR007066	-	-
Sma3	RNA polymerase Rpb1, domain 7	IPR007073	-	-
Sma3	RNA polymerase Rpb1, domain 6	IPR007075	-	-
Sma3	RNA polymerase Rpb1, domain 1	IPR007080	-	-
Sma3	RNA polymerase Rpb1, domain 5	IPR007081	-	-
Sma3	RNA polymerase Rpb1, domain 4	IPR007083	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P18616

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 1037 aas, your sequence is shorter than subject: 132 - 1839

Fln protein: S*PWLSLKQGFSIGIGDTIADVATMEVINGTIIKAKNEVKALIRAAQEKQLEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRT

Protein Length: 133

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGCAGGGTTTCAGTATTGGTATAGGAGACACAATTGCTGATGTTGCAACCATGGAGGTTATCAATGGCACAATAATAAAAGCAAAGAATGAAGTTAAAGCGCTTATTAGGGCTGCTCAGGAAAAACAATTAGAGGCAGAACCTGGCCGCACAATGATGGAGTCCTTTGAAAACAAAGTCAATCAGGTGTTGAACAAGGCCCGTGATGATGCAGGAAGTAGTGCTCAAAAAAGTTTATCAGAGAGTAATAACTTGAAGGCAATGGTTACAGCCGGGTCAAAAGGAAGTTTTATTAACATATCACAAATGACTGCTTGTGTGGGACAACAAAATGTAGAAGGAAAACGAATTCCTTATGGATTTGATGGTCGAACT

Fln Alignment:

Contig21188___WLSLKQGFSIGIGDTIADVATMEVINGTIIKAKNEVKALIRAAQEKQLEAEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFDGRT
P18616_______________WL-LQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRT

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
146	66		33		0.997452
147	33			66	0.997452
148	33	66			0.997452
155	33		66		0.997452
173		33		66	0.997452
188		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain