SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21187

Length: 1317 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene21187 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ninja-family protein AFP3 n=1 Tax=Arabidopsis thaliana RepID=AFP3_ARATH	-	-	3.0e-09	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	ninja-family protein afp3	-	-	3.08565e-15	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	3.08565e-15	68%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Nuclear transport factor 2	IPR002075	-	-
Sma3	Protein of unknown function DUF1675	IPR012463	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Nuclear transport factor 2, Eukaryote	IPR018222	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZJ6

Fln msg: your sequence is longer than subject: 351 - 143

Fln protein: MPYPFQMPATNAQCMSMPVAFSFPYMMPFYASSTQTTGSEPLKCNGTSVSNVVQPVSAHGFPPIQAPVPGTPPNWQQMPQAKVTVTPMPGSVQVSHVSRTSSGRILGIPEQDNRSSEGASSNDTNSQSSKSTEASYLSFQSLSRVPSVNKAQGQILSFSEGSTSNKLEPAQCKQTVEKVSCTTAKSASEMPPIATSQERSTEACCKTSSPFVSDSNDSNQRSCINDTSAHSLEGQTKQRTKKSINDTLAQDSSSNLKSETTSSQLTGDNASLPTWHWVTTTGVGPNGITISGILSSYSSSHVRIVCICHGTQMSPAEFVQHAGSIDVSNPERSIVVNPIPVKIAATLARG*

Protein Length: 352

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTCCGTACCTCCA_-_ATGCCTTATCCATTCCAGATGCCGGCCACCAATGCTCAGTGCATGTCCATGCCAGTGGCCTTTTCCTTCCCATACATGATGCCCTTTTATGCATCTTCAACACAGACCACTGGTTCCGAGCCTTTGAAATGTAATGGCACATCTGTATCCAATGTCGTACAACCTGTTTCTGCTCATGGTTTTCCACCGATCCAAGCACCTGTTCCTGGAACACCACCAAATTGGCAACAGATGCCACAGGCAAAGGTAACAGTGACACCAATGCCAGGATCGGTGCAAGTTTCCCATGTATCTAGAACATCATCAGGCAGGATTTTGGGGATTCCAGAGCAGGATAACAGATCTTCCGAAGGAGCAAGTAGTAATGATACAAATAGTCAATCGAGTAAGTCAACTGAGGCATCGTATTTGAGCTTCCAATCTTTGTCGAGAGTTCCTTCTGTAAACAAGGCTCAAGGTCAGATTTTGTCATTTTCAGAAGGAAGTACATCTAATAAGTTAGAACCAGCTCAATGCAAACAAACAGTGGAGAAAGTTTCTTGCACTACAGCCAAATCAGCTTCAGAAATGCCGCCTATAGCAACCTCTCAGGAAAGATCAACTGAAGCATGTTGTAAAACTTCCTCACCATTTGTTTCTGATTCAAATGACAGCAATCAACGTTCTTGTATTAATGACACTTCTGCACATAGTTTAGAAGGACAAACTAAACAAAGAACTAAAAAATCCATAAATGACACTCTGGCTCAAGACAGTAGTTCCAATTTGAAGTCTGAAACTACTAGTTCTCAGTTAACAGGAGACAATGCTTCATTACCGACTTGGCATTGGGTTACAACCACGGGAGTGGGTCCAAATGGGATAACAATAAGTGGGATCTTATCCAGTTACAGTAGCAGTCACGTTAGAATAGTTTGCATCTGTCATGGCACCCAAATGTCACCTGCAGAATTTGTGCAACATGCAGGCAGCATAGATGTTTCAAATCCTGAAAGAAGCATCGTGGTTAATCCAATTCCAGTTAAAATTGCTGCAACTTTGGCACGGGGTTAA___CATCAAGAGCATCTGCTTTCCTCAAAAGTCCATATAATTTATTGGGAATTATTCCAATTCTGACTATAGAGAAGGGCCCTAATTGTCTCATTAATTATTGGAATATGGAAATCAAACAATCCCTGAAGATATTATATGGTTCTGTTATACACATCTGCAAAATGCATATTGCATAAGAGTTCGGCACCTTTTGCGCGCTTTTTGAAAATAACCTTCATGTCTGAT

Fln Alignment:

Contig21187___TGDNASLPTWHWVTTTGVGPNGXXXXXXXXXXXXSHVRIVCICHGTQMSPAEFVQHAGSIDVSNPERSIVVN
A9NZJ6_______________TGNSPDLP---WVTTSGIGPNGKTISGVMYRYNRNQVKIVCACHGRHMSPSEFVQHAGGADTSNPDNNLVVN

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
386	81			18	0.999994
564		90	10		0.90298
565	10			90	0.90298
566			10	90	0.90298
581			10	90	0.90298
582	10			90	0.90298
622	12		87		0.992554
652	12		87		0.992554
653		12		87	0.992554
654	12		87		0.992554
655	87			12	0.992554
656			87	12	0.992554
1195	80			20	0.995493
1199			80	20	0.995493
1204			20	80	0.995493
1208	20			80	0.995493
1209			80	20	0.995493
1210			40	60	1.0
1211	80			20	0.995493
1212		20		60	0.99255
1213	25		75		0.996473
1214		25	50	25	0.995533
1217	50	50			1.0
1218	25		75		0.996473
1220	66	33			0.997452
1221	66	33			0.997452
1226		66		33	0.997452
1232	33		66		0.997452
1234	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain