SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21156

Length: 1154 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21156

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tyrosine-rich hydroxyproline-rich glycoprotein (Fragment) n=1 Tax=Petroselinum crispum RepID=Q40793_PETCR	-	-	7.0e-25	50%
FL-Next	tr=Putative uncharacterized protein Sb03g042800; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	51%
Blast2go	tyrosine-rich hydroxyproline-rich glycoprotein	-	-	2.02773e-28	61%

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Sterol-sensing domain	IPR000731	-	-
Sma3	Chitin-binding, type 1	IPR001002	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Patched	IPR003392	-	-
Sma3		IPR003612	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Repetitive proline-rich cell wall protein repeat	IPR003883	-	-
Sma3	Pollen Ole e 1 allergen/extensin	IPR006041	-	-
Sma3	Outer membrane autotransporter barrel	IPR006315	-	-
Sma3	Extensin repeat	IPR006706	-	-
Sma3	Root cap	IPR009646	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Peptidase M10B, serralysin, C-terminal	IPR013858	-	-
Sma3	Domain of unknown function DUF1929	IPR015202	-	-
Sma3	Galactose oxidase, beta-propeller	IPR015916	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: C5XFE4

Fln msg: Distance to subject end: 92 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 280 - 401

Fln protein: PWLSLNHKSPPPAEKPEPKLVVIGKVYCYYCWDWSNPEHSHGKHHLEGATVMVTCKAGHEEIKAYGITKINGKFKVLVEGYDYGKWGGAESCKAQRVQTTRPFKVRDSNRSPRCKTGAWLKLKSKSEEEIVLSAKPFAYAPAASAKPYPHCSKIPSPYPPTHHYKSPPLPPPYPHKPPPPPYEYKSPPPVYYYKSPPPPSPFAFPPYEYKSPPPPAYYYKSPPPPSPSPTPPHEYKPPPLPSPPYEYKSPPPPSSPYEYKSPPPPSPLPPPPYYYKSPPS

Protein Length: 281

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCACCTCCACCGCCTTCTCCATTGCCTCCTCCGCCATATTACTATAAATCTCCTCCGTCTCCCTCACCACTGTCGCCTCCTCCATACTACTATAAATCGCCTCAGCCTCCTTCCTCGCCATATTATTACAAGTCGCCTCCTCCTCCACCTCATACATATTATTACAAGTCTCCGCCACCGCCTCCACCTCATACATACTATTACAAGTCTCCGCCACCGCCTTCACCTCATACATATTATTACAAGTCTCCGCCACCGCCTCCGTATTATTATACCTCACCGTCGTGACCTTGGCTGTCACTCAATCATAAGTCTCCCCCTCCAGCGGAGAAACCAGAGCCAAAATTAGTCGTCATTGGAAAAGTATACTGCTACTACTGTTGGGATTGGAGCAATCCAGAGCATTCCCATGGAAAGCATCATCTGGAAGGAGCCACTGTGATGGTGACATGCAAAGCCGGGCACGAGGAGATAAAGGCATATGGAATCACTAAAATTAACGGAAAATTCAAAGTTTTGGTTGAAGGATACGATTATGGAAAGTGGGGAGGCGCTGAGAGTTGCAAGGCACAGCGTGTTCAAACCACCCGCCCATTCAAAGTGCGAGATTCCAACAGATCTCCACGGTGCAAGACGGGAGCTTGGCTCAAGCTTAAATCCAAGTCTGAAGAGGAGATCGTTCTTTCTGCCAAACCTTTTGCCTATGCCCCCGCCGCTTCGGCTAAGCCATATCCCCACTGCTCCAAAATCCCTTCACCTTACCCACCAACCCATCATTACAAATCTCCACCCTTGCCTCCTCCTTATCCCCACAAGCCTCCTCCTCCTCCATACGAATACAAGTCACCACCACCAGTATACTATTACAAATCCCCACCACCTCCATCTCCCTTTGCATTTCCTCCATACGAATACAAATCACCACCACCACCAGCATACTATTACAAATCTCCTCCCCCTCCCTCACCATCTCCCACTCCGCCACACGAGTACAAACCGCCACCACTTCCCTCTCCGCCATACGAGTACAAATCGCCACCGCCTCCCTCTTCGCCATACGAGTACAAATCACCTCCACCGCCTTCTCCATTGCCTCCTCCGCCATATTACTATAAATCTCCTCCGTCT

Fln Alignment:

Contig21156___VIGKVYCYYCWDWSNPEHSHGKHHLEGATVMVTCKAGHEEIKAYGITKINGKFKVLVEGYDYGKWGGAESCKAQ
C5XFE4_______________VIGKVYCYRCFNEAHPDESHGKKHLEGAMVKVTCQANDQALVAFGYTKSNGKYSVILKGLPISNNYGADSCKVE

SNPs (tot: 3)

Position	A %	C %	T %	Probability
210		50	50	1.0
224		33	66	1.0
611	33	66		0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
843	856	CCT CCT CCT CCT CC	14
946	959	CAC CAC CAC CAC CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain