SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21082

Length: 1225 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21082

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein phosphatase 2c	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	84%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	84%
Blast2go	interspecies interaction between organisms	GO:0044419	Biological Process	84%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	RNA polymerase sigma factor 54, interaction	IPR002078	-	-
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR013753	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3		IPR017442	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLNSVFSGRETKFDKAPVSGGGLSENSKFSFGYASSRGKRSSMEDFFVTDTFGVDGQIVGLFGVFDGHGGAQAADYVQQNLFRNLKTHPKFISDTKLAIADAYQQTDSEFLKMENNEHRDAGSTALTATMVGNHLLVANVGDSRAVLCRSGKAVALSRDHKPNQSDERKRIEDAGGFVMWAGTWRVAGVLAVSRAFGDRFLKQYVIAVPEIQEEIINEGVEFFIMASDGLWDVVSNQEAVAIIRFIEDPENAAKRLTDEAFRKGSVDNVTCVVVRFHHS*

Protein Length: 283

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTATTTTTGACTTCAGTGAGTATTATAGAATCTTCTATGATACATATAATACGGTTATTGATTCATTTTGAGATTTATCATGGACACATGATTTCTACCAAAACCAAGCTACAAGAAAGTACGTGGGCAGCAAATTCGTTTTATGAGAATTCAGCATAAGCTTACCAAGATTGGAATGGTCTAAGAGCTGCAATAAGAAAATCATTCAAGGGAAGGATA_-_ATGAGCTATCTAAATTCTGTATTTTCCGGAAGGGAGACAAAATTCGACAAGGCCCCTGTCAGCGGTGGAGGCCTGAGTGAGAATAGCAAGTTCAGCTTTGGATATGCAAGTTCACGAGGGAAAAGATCTTCAATGGAGGACTTCTTTGTGACTGATACTTTTGGAGTTGATGGTCAAATAGTTGGCTTGTTTGGGGTATTTGATGGCCATGGTGGTGCTCAAGCAGCAGATTATGTACAACAGAACCTTTTTCGTAATTTGAAGACCCATCCTAAATTTATCAGTGACACAAAGCTAGCTATAGCTGACGCTTACCAACAAACAGACTCAGAGTTTCTTAAGATGGAAAATAATGAGCATAGGGATGCTGGGTCAACTGCATTAACTGCTACTATGGTTGGAAACCATTTGTTGGTAGCTAATGTTGGTGATTCTCGAGCTGTTCTTTGCAGGTCTGGAAAAGCTGTTGCTCTTTCGAGAGATCATAAACCTAATCAAAGTGATGAGCGAAAGCGAATCGAAGATGCTGGAGGATTTGTCATGTGGGCTGGCACATGGCGCGTTGCGGGTGTACTTGCTGTCTCACGGGCATTTGGGGACAGGTTTTTGAAGCAGTATGTTATAGCTGTACCAGAAATTCAGGAAGAGATCATTAATGAGGGTGTTGAATTTTTCATCATGGCAAGTGACGGATTATGGGATGTCGTTTCTAATCAGGAAGCTGTTGCTATCATTCGGTTTATTGAGGATCCAGAAAATGCTGCAAAAAGACTCACAGATGAAGCATTTCGAAAAGGCAGTGTAGATAATGTCACTTGTGTTGTTGTACGCTTTCATCACAGTTGA___TAGAAGCATTCTTTCATTGTTTCTCCAGAGTGCTATTGCTGTCTATAGTTGTACCAGTGCTTAAATAATGGATCGGCACATCTGTGCACATGCCTGACATTCTTTTGTATATGTCTTGATTAATTTTGATGGCCC

Fln Alignment:

Contig21082___MSYLNSVFSGRETKFDKAPVSGGGLSENSKFSFGYASSRGKRSSMEDFFVTDTFGVDGQIVGLFGVFDGHGGAQAADYVQQNLFRNLKTHPKFISDTKLAIADAYQQTDSEFLKMENNEHRDAGSTALTATMVGNHLLVANVGDSRAVLCRSGKAVALSRDHKPNQSDERKRIEDAGGFVMWAGTWRVAGVLAVSRAFGDRFLKQYVIAVPEIQEEIINEGVEFFIMASDGLWDVVSNQEAVAIIRFIEDPENAAKRLTDEAFRKGSVDNVTCVVVRFHH
A9NWY3_______________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSH

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
664		10	90		0.90298
667	90		10		0.90298
668	90	10			0.90298
672		10		90	0.90298
673	10		90		0.90298
674		10	90		0.90298
676		10	90		0.90298
745	90	10			0.90298
748		10	90		0.90298
749	90		10		0.90298
755		10	90		0.90298
756	90			10	0.90298
757	90			10	0.90298
758	90		10		0.90298
762	90			10	0.90298
763	90		10		0.90298
766	10		90		0.90298
767	90	10			0.90298
768	90			10	0.90298
769		10	90		0.90298
814		10	90		0.90298
818	10			90	0.90298
819	90	10			0.90298
831	11		38		1.0
832	50	11		38	1.0
835			55	38	1.0
837	38	50	11		1.0
838	5	52	5		1.0
839	58	41			1.0
842			41	58	1.0
847			53	46	1.0
848		46	53		1.0
851	53			46	1.0
852		46	53		1.0
853	46		53		1.0
1163	25			75	0.996473
1164	75			25	0.996473
1218	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain