SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene21067

Length: 1443 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene21067

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	poly(A)-binding protein II-like [Brassica rapa]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	protein	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMJ5

Fln msg:

Fln protein: MEDEHEVYGGDIPVEMEGEMEGDTEAHHPDVDMAKADEDAASKDLEEMKKRLKEMEEEAAALRDMQAKVEKEMGALQDPTSAAAVQANKEDADSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGYAYVEFLEPEAVQNAILLNESELHGRQLKVTAKRTNIPGMKQYRGRRFNPYFGFRPRRSYIPPYYYSPYGYGKMPRFRRSMRYRPYY*

Protein Length: 225

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGTCTCTGAATCGGAACGAGGACGAAGAAATA_-_ATGGAGGATGAGCATGAAGTGTATGGGGGAGACATCCCTGTAGAAATGGAAGGCGAGATGGAAGGAGATACGGAAGCTCACCATCCCGATGTGGATATGGCCAAGGCCGATGAAGATGCTGCGTCCAAGGATTTAGAAGAGATGAAGAAGAGGCTCAAGGAAATGGAAGAAGAAGCAGCTGCGCTCAGAGATATGCAGGCCAAGGTAGAAAAAGAAATGGGCGCCCTGCAAGACCCTACTAGTGCAGCTGCAGTTCAGGCAAACAAAGAAGATGCAGATTCACGTTCTGTTTTTGTTGGTAATGTTGATTACTCATGCACTCCAGAAGAAGTCCAGCAGCATTTTCAATCATGTGGGACTGTTAACCGGGTTACAATTTTGACAGACAAGTTTGGTCAGCCGAAAGGGTATGCTTATGTTGAGTTTTTGGAGCCTGAGGCTGTTCAAAATGCTATTCTTCTCAATGAGTCTGAACTTCATGGTCGCCAATTAAAGGTTACCGCCAAAAGGACAAACATCCCAGGAATGAAGCAGTATCGTGGACGACGGTTCAATCCCTATTTTGGATTTCGGCCACGAAGATCATATATTCCACCTTATTATTACTCTCCTTATGGTTATGGGAAAATGCCTAGATTCAGGCGGTCTATGCGGTATAGGCCTTATTATTGA___AAGGAATGAAAGTAGTTTTCAGGGTCTTTACGTTCATTGTTTCATCATCAGATGTGTTGGCTGTTGATATTTGTTGAGTTCCTCGGTTACAGGAACTTCTGGAACAAAAAATACTTCCAACTTTCATCCCAATAGTATTTTATGAGGTAGAAATGATATTGATATGGAATTGCTGTCATTGGTTCTAAGTCATTAAAATCTAAGACCCTGTAGTGGTATTGCTGCAGTAAGAAGAAACCTGCATTATACACAACAGACAAATATGAATGTAGACATGTCATTTTTCATTTCTGGAACTTTTTATATTCTAGATTGTGTTAGTTTATGCTAATCATTTTGGTCTCCATTGAAGGAAGTTTGGATGATGGTCAGACTAGAAACTATGGTAATAGTTATTTGTTTTGAAGGATGGTATTTGAGAGTCTTTGAGTCTCTGGGGTTACACTGTCGTAACATAATGTGTTATCTTGCTATTGATGCAACCCGGAAACCTAGATTTGAAATTTATTCGTGCCATTGATTGCAGATACCAACGTGGTAACATATCTTGGTAGTAATCCAGTACAAACAGAAAATATGTAAGGTTATCTGCTGGTATAATTTATCAATTGTGCTTTGTAACCTTTTGGAACAACTCGATAGCCAAAAACAAGGTTGATTGTAGAATAATCATATGCGCTTTGGCACATGTCTTCATGGTTGAGTTAGAACCC

Fln Alignment:

Contig21067___YGGDIPVEMEGEMEGDTEAHHPDVDMAKADEDAASKDXXXXXXXXXXXXXXXXXXXDMQAKVEKEMGALQDPTSAAAVQANKEDADSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGYAYVEFLEPEAVQNAILLNESELHGRQLKVTAKRTNIPGMKQYRGRRFN-PYFGFXXXXXXXXXXXXXXXXXXKMPRFRRSMRYRPY
A9NMJ5_______________YGAEIP-DMDDEML-DSQLNKDE----GASEDPAVKELEEMKKRLKEMEEEAAALRDMQAKVEKEMGAVQDPAASAASQATKEEADTRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGYAYVEFLEAEAVQNAILLNESELHGRQLKVTAKRTNVPGMKQFRGRRFSAPYMGY---RPWRPPYPYSPYGYGKAPRFRRAMRYRPY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1193		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain