SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20977

Length: 1370 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene20977

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tubulin-specific chaperone B, putative n=1 Tax=Ricinus communis RepID=B9ST41_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	tubulin folding cofactor b	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	embryo development	GO:0009790	Biological Process	80%
Blast2go	cell division	GO:0051301	Biological Process	80%
Blast2go	phragmoplast	GO:0009524	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	CAP Gly-rich domain	IPR000938	-	-
Sma3	Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p	IPR001678	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEA6

Fln msg:

Fln protein: MASVLQNVPDDTVLLHVTHSNLKHHFSELRFSLHSTVGATKERLWKNCGTAVDSMALQLFDDTDKKVCDMNEDSQPLGFYSPLDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYHISEESYGKLDGTFRKFKERLISQDPSIAQPKISEDYMQDLAANIKVGDRCEVDPGGRRGVVMFVGRAETLPPGFWVGVQYDEPVGKNDGMVKGKRYFSCPPLQGAMLRPDKVKVGDYPERDPFEEEEI*

Protein Length: 244

Fln nts: TTCATGATTAATGACAAACCTCCCTCAAGCAATGCTAAACGGAGACGTCGGTGTGTGGTGACCTTGTCTTTTCTTAATCTTCTACAAAAGTATCCTACATAATTTTGTCATGAATTAGTTGGATGGGATCTACCATTTGAATTGACACATCACGATGTTTCTCGACTATCTTAAATATAGCGAGTGGTCACTTCGATCCATTGGCCAATCTAACGAAGTAGAGTCCCCACTTTTTTCAGGAATTTGAATCAGGGAAGGTACTTTCAAGTCCTAAACAGGCATTTAATACCTATGTATATTGATTCTTAGACGCCTCGAAGTTCTGGCACCTTCAGATCGATATTGATTTCTGGTGATTTTATAGTGACACATCGCAGAGCAACGG_-_ATGGCCTCTGTCCTGCAGAATGTGCCCGATGACACAGTCCTTCTTCATGTCACTCATTCTAATCTCAAGCATCATTTTAGCGAGCTAAGGTTTTCTCTTCATTCTACAGTTGGGGCTACAAAAGAGAGGCTTTGGAAGAATTGTGGGACAGCAGTTGACTCCATGGCTCTTCAACTCTTTGATGACACTGACAAGAAGGTCTGTGACATGAATGAGGACTCACAGCCTCTTGGGTTTTATTCTCCACTTGATGGGTATCGCATACATATTGTAGATATGGACCCATCATCAATGACTGCTGGAGGCTGGTTAGAAGACACTTCATTGGTGGAAAAGTATCACATTTCAGAAGAGTCTTATGGTAAACTTGATGGGACGTTTAGAAAATTCAAGGAAAGACTGATTTCTCAAGACCCTTCTATTGCTCAACCAAAGATTTCAGAAGACTACATGCAAGATCTAGCTGCAAATATAAAAGTAGGTGATAGATGTGAAGTTGATCCTGGAGGCAGGAGGGGCGTGGTTATGTTTGTGGGCAGGGCAGAAACTCTTCCTCCTGGATTTTGGGTTGGAGTGCAATATGATGAACCTGTTGGCAAGAATGATGGAATGGTGAAAGGAAAACGCTATTTCAGTTGTCCACCGTTGCAAGGCGCTATGCTTCGACCAGATAAAGTGAAGGTGGGAGATTATCCTGAGCGGGACCCATTTGAAGAAGAGGAAATATAA___GTACTTCAATGCTTTTAAACTGTCTTGGGAGTTCATGTATACGTCCTTGTTAGTAAGGATTCATTATTCATGAAAAATATTGGATGCATGAGATATTTATAGGATGTATATGTTTTACCATCCTTTCTACTTATATTTTTCATGTAAATCTACCATCACGTCGTATGTACATCTTGGGTGGTTCGATAAAGAGGAGGTTGTTGTTGTAATTCAATACAAATTAAATAATCAAGAGAATGGATTTTGGATTGTAACT

Fln Alignment:

Contig20977___MASVLQNVPDDTVLLHVTHSNLKHHFSELRFSLHSTVGATKERLWKNCGTAVDSMALQLFDDTDKKVCDMNEDSQPLGFYSPLDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYHISEESYGKLDGTFRKFKERLISQDPSIAQPKISEDYMQDLAANIKVGDRCEVDPXXXXXXXXXXXXAETLPPGFWVGVQYDEPVGKNDGMVKGKRYFSCPPLQGAMLRPDKVKVGDYPERDPFEEEEI
D5AEA6_______________MASVLQNVCDDTVLLHVTHSNLKQHFSEIRFSLHSTVGATKERLWKNCGTSVDSMVLQLFDDNDKKVCDMNEDSQPLGLYSPRDGYRIHIVDMDPSSMTAGGWLEDTSLVEKYRISEESYGKLDGTFRKFKERLVSPDPSISQPKISEDYMQDLAANIKVGDRCEVDPGGKRGAVMFVGRAETLPPGFWVGVQYDEPVGKHDGMVKGKRYFSCPPLQGVMLRPDKVKVGDYPERDPFEEEEI

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
817	80		20		0.995493
865	83	16			0.994512
869		16	83		0.994512
875	83	16			0.994512
876		16	83		0.994512
877	83			16	0.994512
882	83	16			0.994512
883	83			16	0.994512
887		16		83	0.994512
888	16		83		0.994512
889	83	16			0.994512
892	16	83			0.994512
908		83		16	0.994512
928		11	88		0.923564
930			88	11	0.923564
932	88		11		0.923564
933			88	11	0.923564
934	88		11		0.923564
936	88	11			0.923564
939		88		11	0.923564
940			11	88	0.923564
941			11	88	0.923564
943		88	11		0.923564
948		11	88		0.923564
949	11		88		0.923564
952		11		88	0.923564
990	90	10			0.90298
993		20	80		0.999996
994	90		10		0.90298
997		10	90		0.90298
998	90	10			0.90298
999	90			10	0.90298
1005	86			13	0.999973
1006	86	13			0.999973
1011	84	15			0.999986
1013	76			7	0.999983
1136	90	10			0.90298
1137	90		10		0.90298
1168			10	90	0.90298
1169		10		90	0.90298
1170	90			10	0.90298
1173	90	10			0.90298
1175		11	88		0.923564
1176	11		77	11	0.968132
1178		11		88	0.923564
1179	11			88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain