SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20924

Length: 448 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene20924
ATGGGGATTTTACTGGATACTTTGAATGATAACTTGAGGCATCCCAATGCACAAATTCAGGTTTGTGCCGTCGAATCTCTAAAGCAGTTTGTCCGTACCTATCTTATTTCAGCAGATGCTTTACTTGTCAAAGACATAACATCAAAATATTTACAAGTTTTGAGAAGTGATCCTAACGTAGCAGCAAAACGAGGATCGGCATTAGCACTAAGTGTCTTGCCATATGAGTTTTTAATTGCAGATTGGAGGATCATATTGAAGACACTGTGTGCTGCTTGCCTTGTCCCAGAAAATCCTGATGATCGAGATGCTGAAACACGTGTTAATGCCGTTCGTGGACTAGCAACAGTTTGTGAAACATTGACTGGTGCATGTATAGACTCCACTCTGAGTGTCCCAGCTAGTGAAGAGTCTCTATTAGATGTCATAAAGATGCTGTTGTGGACTG

Ace file of the UniGene sp_v2.0_unigene20924 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative tubulin-folding cofactor [Oryza sativa Japonica Group]	-	-	4.0e-34	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	63%
Blast2go	tubulin-specific chaperone d-like	-	-	1.89456e-42	73%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	1.89456e-42	73%
Blast2go	cytokinesis	GO:0000910	Biological Process	1.89456e-42	73%
Blast2go	microtubule-based process	GO:0007017	Biological Process	1.89456e-42	73%

Source	InterPros	Term	Type	e value	Identity
Sma3	HEAT	IPR000357	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6I392

Fln msg: Distance to subject end: 398 aas, your sequence is shorter than subject: 149 - 1269

Fln protein: MGILLDTLNDNLRHPNAQIQVCAVESLKQFVRTYLISADALLVKDITSKYLQVLRSDPNVAAKRGSALALSVLPYEFLIADWRIILKTLCAACLVPENPDDRDAETRVNAVRGLATVCETLTGACIDSTLSVPASEESLLDVIKMLLWT

Protein Length: 150

Fln nts: ATGGGGATTTTACTGGATACTTTGAATGATAACTTGAGGCATCCCAATGCACAAATTCAGGTTTGTGCCGTCGAATCTCTAAAGCAGTTTGTCCGTACCTATCTTATTTCAGCAGATGCTTTACTTGTCAAAGACATAACATCAAAATATTTACAAGTTTTGAGAAGTGATCCTAACGTAGCAGCAAAACGAGGATCGGCATTAGCACTAAGTGTCTTGCCATATGAGTTTTTAATTGCAGATTGGAGGATCATATTGAAGACACTGTGTGCTGCTTGCCTTGTCCCAGAAAATCCTGATGATCGAGATGCTGAAACACGTGTTAATGCCGTTCGTGGACTAGCAACAGTTTGTGAAACATTGACTGGTGCATGTATAGACTCCACTCTGAGTGTCCCAGCTAGTGAAGAGTCTCTATTAGATGTCATAAAGATGCTGTTGTGGACTG

Fln Alignment:

Contig20924___LLDTLNDNLRHPNAQIQVCAVESLKQFVRTYLISADALLVKDITSKYLQVLRSDPNVAAKRGSALALSVLPYEFLIADWRIILKTLCAACLVPENPDDRDAETRVNAVRGLATVCETLT
F6I392_______________LLDTLNENLRHPNSQIQNAAVQALKYFVPAYLIKGDNENLNNMTSKYLEQL-TDPNAAARRGSALAIGVLPYEFLAKRWRVILLKLCNSCAIEDKPEDRDAEARVNAVKGLISVCETLT

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
120	25		75		0.996473
253	33		66		0.997452
257		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain