SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20901

Length: 1875 nt

Origin of reads: Inia v1 Biogeco3 v1 Uagpf v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene20901

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative RRM-containing protein SEB-4 n=3 Tax=Poaceae RepID=Q5N8W4_ORYSJ	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	rna-binding protein	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV35

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 28 aas, your sequence is shorter than subject: 258 - 295

Fln protein: MEGTGSSNGKVFGDTTNTKLFVGGLAWETKREAMHLYFEQFGEILEAVVITDKNTGRSRGYGFVTFRDPDSARRACADPAPIIDGRRANCNLASLGSRRFQPCTPRPGNQVPVVTSFPLQTGGPGYPGRPTFPQHFGQYAFQEGFPYHIYGFSPYSTDYTYPPNYYNPYGGTQFPHIYPSQGMVSSPVLYPCYPFNQPLQTGNGGSYPQAQTLSVPAHVLQFPTPAPGNGLSRLPQQTYGGIMSTPAAVPATTGDLS*

Protein Length: 259

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCATTATCTTTTTCACCCTAATTCTGTCAGTGCTTCACTCCCATTCCTTTGGATTGAAATTCCACGGCCAGAGCATTCATTGCGCCCACAGCTTGTCGGTCTGTTTGAGTTCTTGATAGCCAGCAAGAAGAAGCCTTACAGTACTTGCAGGGATTGTCACGGTCTTGATTTTTGATAGGTAAAACATTGCAAGGGATCTTGGTGGCATTGGCATTGGCAGGCAGCC_-_ATGGAAGGAACTGGATCTAGCAATGGGAAGGTATTTGGAGATACAACGAACACCAAACTTTTTGTGGGAGGTCTGGCTTGGGAGACAAAACGTGAAGCTATGCATCTCTACTTTGAACAGTTTGGGGAAATTCTGGAGGCTGTGGTTATTACTGATAAGAACACTGGACGCTCCAGGGGCTATGGCTTTGTAACTTTTCGTGACCCTGATTCTGCGAGGAGAGCTTGTGCAGATCCCGCCCCGATCATCGATGGAAGACGAGCTAATTGCAACCTGGCTTCGCTCGGCTCTCGGCGTTTCCAACCTTGTACACCACGGCCAGGAAATCAGGTCCCGGTGGTGACTTCCTTCCCTCTTCAGACAGGAGGGCCTGGATACCCTGGCCGGCCAACATTTCCTCAACATTTTGGCCAGTATGCATTCCAGGAGGGTTTCCCATATCATATATATGGGTTTTCTCCATACTCCACAGATTACACTTATCCTCCGAACTACTACAATCCATATGGAGGAACTCAGTTTCCCCATATCTATCCGTCCCAGGGAATGGTCTCAAGTCCTGTACTTTATCCATGCTATCCATTCAATCAACCTCTGCAAACTGGTAACGGTGGATCATATCCTCAAGCTCAGACATTAAGTGTGCCTGCACATGTATTACAATTTCCAACTCCAGCACCTGGCAATGGGCTTTCAAGATTGCCACAGCAAACTTATGGGGGAATCATGTCCACACCTGCTGCAGTTCCTGCAACCACAGGTGATCTCTCCTGA___TTAACTGATTCAAAATATTTCAGAAGAAAAGAAAAATCCAGAACAAAATTATTACTGAACAAAACTGTGTGACTATGTATTTGGTAATGACAGTTTCTGTACTCCCAAATCATACAGTCCAACAATATGCAGTTCAGCCAACTATATACCACAACAAGGAGGTGATACATCAGCTTAAGGCCCTCCCATTGAACAGTCAGCAAAATGAGAAAAGCTGAAGCAATCTATATGAATCTAACAATATGCACTCTGTAAACATAAAAAAGCAAAGATTTCTGCCATTTTTGACAACTAATTTTTCTCCACTAGTGAATGGATATGCTACTTCTAATTGAAGATTTAGCAATTTTAGATTAGTACAGCCTGATCACATTATTAAGATTAACTCCTTCCCAAGCTTTCAAGAGAAGAAATTCTATATTGGTTTCTCAGTACAGTACTGCATCTAATGGAACTCAGGGCAACTGGTTTCCTGCACAGCTCATCTGGTTTTAATATTTATTTGGTTCCTCGTTCAATGGGTCAGAGAAAATTGATGGTGTTTCACATTGGCATGCAATTTTAATGATTCTAGCGTGACACTGCATAGCTTCAGGTGATTGGTTTTAATCATTCTGGCGTGACATGCATAGTTTCAGGTGATTGGCCAAACTTCGATGGGATCTAACAAAAGCTGCGGTTATATTTTTTTTAATAATGTATTCACTTTTATGTAGGCCAAAGGGAGCAATGCTGTGTGTATCTGTGATGGCCATAGCGTGACCATTGTTTTAGCCAATAGAATAATATATAGTCCAGAAAATGCTCATCATTCGAGCAGACTGTGTAGTCTTTCCATACTTACTACC

Fln Alignment:

Contig20901___QAAMEGTGSSNGKV--FGDTTNTKLFVGGLAWETKREAMHLYFEQFGEILEAVVITDKNTGRSRGYGFVTFRDPDSARRACADPAPIIDGRRANCNLASLGSRRFQPCTPRPGNQVPVVTSFP--LQTGGPGYPGRPTFPQHFGQYAFQEGF-PYHIYGFXXXXXXXXXXXXXXXXXGGTQFPHIYPS-QGMVSSPVLYPCYPFNQPLQTGNGGSYPQAQT---LSVPAHVLQFPTPAPGNGLSRLPQQTYGGIMSTPAAVPAT
A9NV35_______________QQQQSGSGGGGGAMGQFGDTTFTKVFVGGLAWETQKETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESAMRACVDSSPIIDGRRANCNLASLGAQRSRPSTPQPGSRFRILGSFPTGLQTGGSFYNVGAAFPQP-AHYGFQQGFSPYHTYGFSSYSSENTFHPNYYSPYGGPHYPQMYPGPAGMISNPALYPYFQYTQPLQGSAG--YPQATQNFGLHFP-HIMHYPAAGSSGAISGLQAQQYGGVLSIPTAVPSS

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1583		13		86	1.0
1834		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain