SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20794

Length: 2196 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene20794
CGTCGTGACCTTGGCTGTCACTCAATCTGCTCTCCTCTGCTCGTAAAGATCGTTAGCTGTCTTGCTGGATTTGAAGGGTTGCGGTATGCCTGGAAATCCTGTTCTTGTTCTGAGATTCAATTGCAGTTTTTCTGTGTATAATCTGTGTAATTTGTCAATTGAATAAAGCCGAAAAGCATGGCTATTAATTTTTCCTGTAGAATTTGTGTGTGTTCATAGCATTACAGATGAACTTTCTTGAATTGATGTGCAGAACAGCATATACTGATCTTGCAGGACTCCTCGATCAATCAAATTTTAGACAAAGTAGCCTGCAGACGTAATTTAATTCAAGATGACAGTTATTGTACAAGAGCCTCTCCTCGAAGGAGATGAGGTCAACCAAACTCGAATCGTCGGGGACCCCGCAGAGTCTGGAACTCTTGAGTTGGATGGGGGTTTTGACACACCAGACAGCAATGCCTTTGGTCATGCTTTCAGAGATTTTGAAAAGGAAAGCGACAGACGGGCTGGCGTGCAAGAATTTTACAGAATTAATCACATCAACCAGACTTATGACTATGTTGGATATTGCGGGAAGCGCAGAGTCGGTTATGATGGTCACGTTTGGTTGTCAACTTGGGTGCTTATCGAGTTTGGTTATCCACTTTTCTGTTTTCTTCTGTGTGGTTGCAGGTATTAAGCAAACGTGAACATTATGGTAAGCTTGACAAAGCTGTTATGAGCATCTGGGAATGCTGTGAACTTCTAAACGAGTTTGTAGATGAGAGTGACCCTGACCTTGATGAGCCTCAAATAGAACATCTGCTACAGACAGCAGAGGCTATCCGGAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTAATCCATGGTATGAGTTAGACCCTGTGTAGATCTAATCTAACCTTCTATATTCACACTAACTTGTGCTGCAGCAAACCAACTCAACTTAAATTCTCTGCCAGAAATGGCATGATTAGCTGAGTAATAATCTGATTTGGTATATGTCATAGGATTATAGTCTAGTTAAGTTGTGATTGGGTTGTAGTTCAAATTGTGATTGAGAAGAGTGCCTGCAGATCTGGGCAAGGTACTACTCCATCCTAGCTTTGGAGAGGAACCTCAATGGGCAGTTGTAGGTGAGAGCTGATTGAACATTCCTCGCTATTAACTTGAATGTAACCTATCCATGATTTAGATCTCTGTTATATATTTAACTCAAGGAACCAGTCCTTCAGTGAGGACTACTGCTAATTTTAGTTATCACTGATCAAAGCTGCCTTCTAGAAATGTCTTGGATTTGTTGCTAACCGTGTCTTTAGTACAGTCCTAAAGAGCCTAAATATCTGACATTCTTTTAGGTGACACTTATCCTTTGGGATGTGCTTTCGATGAATCCATAGTTCACTGCGAGTTTTTCAAGGAAAATCCAGATTTTTACAACTCAAAATACAACACAAAGTACGGGGTGTACTCTGAGAATTGTGGACTAGATAACGTTATTCTTTCCTGGGGTCATGATGAGTACATGCACATGGTGGCTAAAATGAATAATACAACATTGCCTCCAGAGGCTCTCTTTATCATAAGATTCCATTCTTTCTATGGTAAGCAAAATAAAATCGCATTTGCTTTCTAAGTCCTAACAAAATTGATTGACTTGACCGACTGAGAATGCATGGAACGGATGATGTATGTACTACAGCTCTGCACCGTGCTGGTGCTTACACGCACTTGATGAATGAAGAAGACAAGGAGATGCTCGAGTGGGTTAAAATATTCAATAAATATGACTTGTACAGTAAGAGTAAGGTCAGAATTGATGTGGAGGCCGTGAAGCCATATTACCAATCACTTATCGACAAGTACTTCCCCTCCAAATTGAGATGGTGACTACATCTCTTCCAAACTGAAATGGTGATTATAGATAGCTATGGATACTCTGTGGGATTGGATGGCCTCAATAAGGATATTATTGGTGTTATTAGAGCTTGATATACTCTTGTAATACAGTGGGTTGGATTAGCTTTTTATTAGGAGGGATTATGTCAAGAATATCAATGTCAAGTGGGGTGAATTAGATTTAATTAGGAAGCATAAACTCTAGAGTGAATTAGCCTGGGTAATGGGGACTGGATTGGACTTGCTAGGGATGATAAGGCAATGATAAGGCCATGTGAAGATTCT

Ace file of the UniGene sp_v2.0_unigene20794

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PRE87 protein n=1 Tax=Pinus radiata RepID=O65014_PINRA	-	-	82%
FL-Next	tr=PRE87 protein; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	90%
Blast2go	inositol oxygenase 1	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Inositol oxygenase.	EC:1.13.99.1	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		0.0	83%
Blast2go	Inositol phosphate metabolism	00562		0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	syncytium formation	GO:0006949	Biological Process	0.0	83%
Blast2go	inositol oxygenase activity	GO:0050113	Molecular Function	0.0	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	0.0	-
Sma3	Inositol oxygenase	IPR007828	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: O65014

Fln msg: Separated hits, possible frame ERROR between 885 and 1364, your sequence is longer than subject: 392 - 217

Fln protein: MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLGDTYPLGCAFDESIVHCEFFKENPDFYNSKYNTKYGVYSENCGLDNVILSWGHDEYMHMVAKMNNTTLPPEALFIIRFHSFYGKQNKIAFAF*VLTKLIDLTD*ECMERMMYVLQLCTVLVLTRT**MKKTRRCSSGLKYSINMTCTVRVRSELMWRP*SHITNHLSTSTSPPN*

Protein Length: 393

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTGCTCTCCTCTGCTCGTAAAGATCGTTAGCTGTCTTGCTGGATTTGAAGGGTTGCGGTATGCCTGGAAATCCTGTTCTTGTTCTGAGATTCAATTGCAGTTTTTCTGTGTATAATCTGTGTAATTTGTCAATTGAATAAAGCCGAAAAGCATGGCTATTAATTTTTCCTGTAGAATTTGTGTGTGTTCATAGCATTACAGATGAACTTTCTTGAATTGATGTGCAGAACAGCATATACTGATCTTGCAGGACTCCTCGATCAATCAAATTTTAGACAAAGTAGCCTGCAGACGTAATTTAATTCAAGATGACAGTTATTGTACAAGAGCCTCTCCTCGAAGGAGATGAGGTCAACCAAACTCGAATCGTCGGGGACCCCGCAGAGTCTGGAACTCTTGAGTTGGATGGGGGTTTTGACACACCAGACAGCAATGCCTTTGGTCATGCTTTCAGAGATTTTGAAAAGGAAAGCGACAGACGGGCTGGCGTGCAAGAATTTTACAGAATTAATCACATCAACCAGACTTATGACTATGTTGGATATTGCGGGAAGCGCAGAGTCGGTTATGATGGTCACGTTTGGTTGTCAACTTGGGTGCTTATCGAGTTTGGTTATCCACTTTTCTGTTTTCTTCTGTGTGGTTGCAGGTATTAAGCAAACGTGAACATTATGGTAAGCTTGACAAAGCTGTT_-_ATGAGCATCTGGGAATGCTGTGAACTTCTAAACGAGTTTGTAGATGAGAGTGACCCTGACCTTGATGAGCCTCAAATAGAACATCTGCTACAGACAGCAGAGGCTATCCGGAAAGATTACCCAAATGAAGATTGGCTTCATTTGACTGGCCTAATCCATGGTATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTTTTAGGTGACACTTATCCTTTGGGATGTGCTTTCGATGAATCCATAGTTCACTGCGAGTTTTTCAAGGAAAATCCAGATTTTTACAACTCAAAATACAACACAAAGTACGGGGTGTACTCTGAGAATTGTGGACTAGATAACGTTATTCTTTCCTGGGGTCATGATGAGTACATGCACATGGTGGCTAAAATGAATAATACAACATTGCCTCCAGAGGCTCTCTTTATCATAAGATTCCATTCTTTCTATGGTAAGCAAAATAAAATCGCATTTGCTTTCTAAGTCCTAACAAAATTGATTGACTTGACCGACTGAGAATGCATGGAACGGATGATGTATGTACTACAGCTCTGCACCGTGCTGGTGCTTACACGCACTTGATGAATGAAGAAGACAAGGAGATGCTCGAGTGGGTTAAAATATTCAATAAATATGACTTGTACAGTAAGAGTAAGGTCAGAATTGATGTGGAGGCCGTGAAGCCATATTACCAATCACTTATCGACAAGTACTTCCCCTCCAAATTGA___GATGGTGACTACATCTCTTCCAAACTGAAATGGTGATTATAGATAGCTATGGATACTCTGTGGGATTGGATGGCCTCAATAAGGATATTATTGGTGTTATTAGAGCTTGATATACTCTTGTAATACAGTGGGTTGGATTAGCTTTTTATTAGGAGGGATTATGTCAAGAATATCAATGTCAAGTGGGGTGAATTAGATTTAATTAGGAAGCATAAACTCTAGAGTGAATTAGCCTGGGTAATGGGGACTGGATTGGACTTGCTAGGGATGATAAGGCAATGATAAGGCCATGTGAAGATTCT

Fln Alignment:

Contig20794___MSIWECCELLNEFVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHLTGLIHGMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLLGDTYPLGCAFDESIVHCEFFKENPDFYNSKYNTKYGVYSENCGLDNVILSWGHDEYMHMVAKMNNTTLPPEALFIIRFHSFY
O65014_______________MSIWESCELLNEFVDESDPDLDEPQIEHLIQTAEAIRKDYPNEEWLHLTGLIHDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVVGDTFPLGCAFSETIVHHEFFKDNPDFHNPKYNTKYGVYSEKCGLDNVLMSWGHDEYMYLVAKMNNTTLPPAALFIIRFHSFY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1620		33	66		0.997452
1622	66	33			0.997452
1623	66			33	0.997452
1754	75		25		0.996473
1755			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain