SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20777

Length: 897 nt

Origin of reads: Biogeco2 v2 Biogeco3 v1

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene20777

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Copia-like retrotransposable element n=1 Tax=Arabidopsis thaliana RepID=Q9LH44_ARATH	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	retrotransposon unclassified	-	-	63%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	tRNA-dihydrouridine synthase	IPR001269	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Putative 5-3 exonuclease	IPR004859	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3		IPR010256	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	tRNA-dihydrouridine synthase, conserved site	IPR018517	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: your sequence is shorter than subject: 292 - 407

Fln protein: NHKGVCKGCAEGKHTRGPFPSSVTKTSEILQLVHSDLSGMLPVTSLV*CSYYMTFTDDFSRKTWIYFLKKKDEAFMWFRTFKALVENMTGKKIKILRTDNGTEYESNEFKDFCREAGIKRETTTTYTPEQNGVAERKNRTIVEAARAMLCDQGLPKFLWGEAANTAVYIQNRCPHSALDSKTPEEVFSGKKADVSHFRIFGCPVYFHVPKEKRSKLDATGKKGMFVGYSEISKAYRVYVPGQREVEISHDVTFDEDASLKKVVDLPRSEENHEERPGNLEEPQDETMPDVE*

Protein Length: 293

Fln nts: AATCATAAAGGTGTATGTAAGGGCTGTGCTGAAGGAAAACATACAAGGGGACCTTTCCCCTCAAGTGTCACAAAGACATCTGAGATATTGCAACTGGTCCATTCTGATCTTTCCGGTATGTTGCCTGTAACATCCCTGGTGTGATGTTCTTACTATATGACATTTACTGATGACTTCTCTCGCAAAACCTGGATATACTTCTTGAAGAAGAAGGATGAGGCTTTCATGTGGTTCCGTACCTTCAAAGCCTTGGTGGAAAATATGACCGGAAAGAAGATCAAGATTTTGAGGACTGACAATGGCACTGAATATGAGTCAAATGAGTTCAAAGACTTTTGCAGAGAAGCTGGCATTAAGAGGGAGACTACCACTACATATACTCCTGAGCAGAATGGTGTTGCTGAACGCAAGAATAGGACTATTGTGGAAGCTGCCCGTGCCATGCTATGTGACCAAGGTCTTCCAAAGTTTCTGTGGGGAGAAGCTGCAAATACTGCTGTGTACATTCAAAACCGATGCCCTCATTCCGCTTTGGACTCCAAAACTCCCGAAGAGGTTTTCTCTGGTAAGAAAGCTGATGTCTCACATTTTAGAATTTTTGGATGTCCTGTCTATTTTCATGTGCCGAAAGAAAAGAGAAGTAAGCTGGATGCTACTGGGAAGAAAGGAATGTTTGTGGGCTACAGTGAGATTTCTAAGGCATATAGAGTCTATGTACCTGGTCAAAGGGAAGTAGAGATAAGCCATGATGTCACTTTTGACGAAGATGCTTCCCTAAAGAAAGTAGTAGATCTTCCTAGATCTGAAGAAAACCATGAAGAAAGACCTGGAAATCTGGAAGAACCCCAGGATGAGACTATGCCTGATGTTGAATGA___GTGACAGCCAAGGTCACGACG

Fln Alignment:

Contig20777___KGVCKGCAEGKHTRGPFPSSVT-KTSEILQLVHSDLSGMLPVTSLV*CSYYMTFTDDFSRKTWIYFLKKKDEAFMWFRTFKALVENMTGKKIKILRTDNGTEYESNEFKDFCREAGIKRETTTTYTPEQNGVAERKNRTIVEAARAMLCDQGLPKFLWGEAANTAVYIQNRCPHSALDSKTPEEVFSGKKADVSHFRIFGCPVYFHVPKEKRSKLDATGKKGMFVGYSEISKAYRVYVPGQREVEISHDVTFDE
B8LKX7_______________QGVCEGCMSGKQHMEKFIKGKSWRAKTPLHLVHSDLMGPLEHPSISGSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCMLHARNMDPKFWAEAINTATYIVNRTPTIAVKHKTPEEAWSRRKPTVSHFKVFGCDVYVHIPDEKRKKLDRKSHKCIMVGYSETSKAYRVYDPEKNEILIRRDVIFDE

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
296	83		16		0.994512
343	14		85		0.993533
365		83		16	0.994512
373	16		83		0.994512
418	83			16	0.994512
431		83		16	0.994512
436		83		16	0.994512
452	80		20		0.995493
472	40	60			1.0
508		75	25		0.996473
513		75		25	0.996473
521		75		25	0.996473
606		33		66	0.997452
635	66			33	0.997452
640	66			33	0.997452
642	33			66	0.997452
643	66	33			0.997452
648		33	66		0.997452
649	33		66		0.997452
651			33	66	0.997452
653		66		33	0.997452
654		33		66	0.997452
657			33	66	0.997452
658	33		66		0.997452
659		33	66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain