SustainPineDB

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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20715

Length: 333 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene20715
CGTCGTGACCTTGGCTGTCACTCAACATCTTGCTGCACACAACTACTTTGGATGATGCAAACATTCCAAGACATTCAAATCACATGTACTCCACCCATCTCCATTCTATGTGATAATACAAGTGCCATCAGTATTTCAAAGGATTTAGTCATGCATTCCAAGACCAAGCACATAACCATCAAATATCATTTTCTATGTGAACAAGTGCTTGAACAAAAGGTCAAATTGGAGTATGTTCCCTCCAAAGAATAGGTTGTTGATATATTCACTAAACCACTACCCAGAGAGACATTTGAATATCTCATACAGAAACTGGGAGTAGTTTCTGATCAT

Ace file of the UniGene sp_v2.0_unigene20715 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Copia-like retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana RepID=Q9FG84_ARATH	-	-	9.0e-21	52%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	29%
Blast2go	retrotransposon unclassified	-	-	4.35094e-24	69%

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, your sequence is shorter than subject: 111 - 1328

Fln protein: RRDLGCHSTSCCTQLLWMMQTFQDIQITCTPPISILCDNTSAISISKDLVMHSKTKHITIKYHFLCEQVLEQKVKLEYVPSKE*VVDIFTKPLPRETFEYLIQKLGVVSDH

Protein Length: 112

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACATCTTGCTGCACACAACTACTTTGGATGATGCAAACATTCCAAGACATTCAAATCACATGTACTCCACCCATCTCCATTCTATGTGATAATACAAGTGCCATCAGTATTTCAAAGGATTTAGTCATGCATTCCAAGACCAAGCACATAACCATCAAATATCATTTTCTATGTGAACAAGTGCTTGAACAAAAGGTCAAATTGGAGTATGTTCCCTCCAAAGAATAGGTTGTTGATATATTCACTAAACCACTACCCAGAGAGACATTTGAATATCTCATACAGAAACTGGGAGTAGTTTCTGATCAT

Fln Alignment:

Contig20715___STSCCTQLLWMMQTFQDIQITCTPPISILCDNTSAISISKDLVMHSKTKHITIKYHFLCEQVLEQKVKLEYVPSKE*VVDIFTKPLPRETFEYLIQKLGVVSD
P10978_______________ATETGKEMIWLKRFLQELGLHQKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGMHSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain