SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20669

Length: 3477 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene20669
CGTCGTGACCTTGGCTGTCACTCAATTTTTGTATATCAAATGCTTGAAGAGAAGCTCACACAGACAGACGATTACAACAGCATCTGTGTCGAGATCGGCCTTGTTTCATCCTCTCAGTTGGATCCTATCTACAGAGCTACTGTTGCCCGATTTGGAGTGATTTTGTGGGTTGTTTGTTCGGCATTTCCAAGGAAGGAGACTTGTTATCAGGCATGGCCATGGAGGAATGTTGCTCTACTCAGCTTATTGATGGAGAAGGCAATTTCAATGAAGCTGGTCTTGACAAGTGCATGAAGGCCATGAAATTGGCAGATCAGGGACTCTCATATGCTGTAGTTTCTATCATGGGCCCCCAAAGCAGCGGAAAGAGCACACTCTTGAATAATCTTTTCCATACAAATTTCAGAGAGATGGATGCATTTAGGGGGAGGACTCAAACTACGCAGGGTATTTGGATAGCGAGGGCTACTGGTATTGATCCCTGTACACTAATCATGGATCTAGAGGGTACTGATGGGAGAGAAAGAGGAGAGGATGATACTGCATTTGAGAAACAGAGTGCATTATTTGCCTTGGCTGTTTCAGACATAGTGTTGATAAACATGTGGTGTCATGATATTGGCCGTGAGCAGGCAGCAAACAAGCCACTATTGAAAACAGTATTCCAGGTTATGATGCGTTTATTTAGTCCCCGCAAGACAACATTACTGTTTGTTATTCGGGACAAGACTAAGACTCCTCTAGAAGTGCTGGAACCTGTTCTTCGAGAAGATATTCAAAAGATATGGGATTCTGTTCCTAAGCCTCCTGCGCACAAACAAACCCCACTTAGTGAGTTCTTCAATGTGGAGGTGACAGCCTTATCCAGTTACGAGGAGAAGGAAGAGCAGTTCAAAGATCAGGTAATGTTGCTGAGACAACGGTTTTTCAACTCCATAGCACCAGGCGGACTTGCAGGTGACAGAAGGGCAGTTGTTCCTGCCTCAGGTTTTCCATTCAGTACACAACAGATCTGGAAAATTATTAGAGAGAATAAAGACCTTGACTTGCCTGCTCACAAGGTTATGGTTGCGACTGTTCGTTGTGAAGAGATTGCTAATGAAAGTCTTGCTAAATTGGAATCCGATGAGGATTGGCTAGAACTAGAGGAAGCTGTACAATCTGGTCCAGTGCTAGGGTTCGGGAAGAAAATAAGTTCCATTCTAGACAAGTATTTTTCAGATTATGACACAGAAGCAGCTTATTTTGATGAGAGTGTAAGAACAACCAAGCGTCAGCATTTGGAGTCCAAGTCATTGGATCTTGTCTATCCTGCTTATCAAGCGATGCTGGGACACCTCCGTGCTAAAGCTTTAAATATGTTTAAGGAGCAGCTTGAGCAGGCTCTTAAGATAGGAGAAGCATTTGCAGGGGCTGTTCGTGATTGTATGGAAACTTCTTTGGCAGAATTCGATCAAGGATGTGTAGATGCAACTGTTCAGCAAGCAACCTGGGACTCATTGAAAACCAGAGAAAAATTACGCCGTGATATTGACAACCATGCAGCTTCGGTTCGTGCCACGAAGCTGTCAGAAATTTCAGCACAATTTGAGAAGCGCCTTAGTGAAGCACTTTCTGAGCCAGTTGCATCTCTCCTTGATGCTGGTTCACGAGACACTTGGCCATCAATCAGGAAGATCTTTAAACGTGAGACCGACTCAGCAATATTGGATTTTTCATCTTCCATAAGTGGGTTTGAAATTGATGACAAGACTGCTAATAAGATGGTTGAGAACTTGAAAGAGTATGCAAGAAGTGTGGTTGAGAAAAAGGCTAGGGAAGAAGCTGGGCAAGTGTTGATCCGGATGAAGGAGAGGTTTTCAAGTTTGTTTAGTCATGATTCTGATTCAATGCCAAGGGTTTGGACTGGGAAAGAAAACATCCGAGCTATTACAAAAGATGCTCGTTCCAGGTCTTTGAAGCTGCTTGCTGTCATGGCTGCCTTACGTTTGGAAGAAAAACAGATAAATCAGAAGAAAAAACAGATAAAATTGAATCTGTGTTGTCGTCTGCCCTACTAGATAATGGTGATGGATCTAGTGCCATCCAAGAGAGAAGTGTCTCTGCTATAGTGAGCCCACTAGCGTCAAGCACTTGGGAGGAGGTTTCTCCTTCTGATACATTAATTACACCAGTGCAATGTAAGTCTATATGGAGGCAATTCAAAACAGAGACAGAGTATACAGTTGGGCAGGCTATTGCTACTCAGGAAGCCAGTAGGCGAAGTTCTACATTTTTGCCACCGCCATGGGCGATAGTTGCATTGTTAATTCTTGGATTCAACGAGTTCATGTTACTCCTGAGGAATCCATTATATCTTGGTGTGCTGTTTGTGCTTTTTCTGTTGGTAAAAGCACTATGGGTACAACTGGATATTGCAAGTATATTTCAGCATGGCGCTCTCTCTGGCATCCTTCAATTATCAACCAAGTTTCTTCCCACTGTCATGGGCATTCTAAAGAGGCTTGCTGATGAGGGGCAGAAGGTTGGAGCATCAAGTAACAATGCAAATGGTAGTGTTCAGCATGTGCCTTTGCCGGATCAAGAATCTGATTTTTCCTCTCAAGGCAGCTCATCTGCTAGTAATCTCACATACTCCGGTTCCATGACGCATAGACAAGTGGGTAATGTTGACATGAGAGTGGATTGATCGTGCTAGCTGATTGAATCTCTACCCATCGTTGGCAACTTCTCTTAAAATTATATTTGACAACAGAAATCATTGGAGTTAATTTGTCTCTTTAGATTCTATGTACACGAGTATTTTCTTTATGTACCATATGGAGTATGGTATTCTTCAACTGAAGCAATAACGAAAAGAAATTTGAAACAGTTGCTGCAAGGTTGATTGAAGGTCTCTCTAAATGATTTAGAGTTTAGGCATGGCTCTCAGTCTTATTCACGAGATCCATTTTCTCGGTTTCAGTGATCCATTTCAGAAGCAAGATATGTAAGTGGTGTTTTTTTCACTTGGAGGAATGGTTCCTCTGGGTTCATGTGTATTTTGAAAGCTACGTTCATTCAAGGATTCCAGGCATTGCTTTTTTTGTCGATTCATACTGGAAATTCTAGTATATTTATTGGTATCAACAATCGAGTGCTCATGCATTTGGATGTTTAATACTTTCTGTTTATAACCACATAGTTCTATCTGAGCATATGTGGGACCCTTTTTCACTTATTCAGTGTTGATGCTGATTCCTTTAATATCTTTACATTCTGCTCAGTGACGGGTGTTATTCTCTGGTTATTTGCAATTGCTGGAGTAGTGCCAACAAGACCAGAAAGGGGTGTGGTCTGCAGAACTATGAATTGTGTTCTAGATCTGGCTGTTCATTGTTCGTACATAGCTTGCATATCATTTGATATTGTAAAATCTATTAATGCTGACCCTCATCTCAGAAGTGAGAAGAACAGACTTCCGTAGGGTTGTTTGCA

Ace file of the UniGene sp_v2.0_unigene20669 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO	-	-	72%
FL-Next	sp=Protein ROOT HAIR DEFECTIVE 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	69%
Blast2go	protein root hair defective 3 homolog 1-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	84%
Blast2go	cell tip growth	GO:0009932	Biological Process	84%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	84%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	84%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	84%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	84%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Root hair defective 3 GTP-binding	IPR008803	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P93042

Fln msg: Separated hits, possible frame ERROR between 1988 and 2012,

Fln protein: MAMEECCSTQLIDGEGNFNEAGLDKCMKAMKLADQGLSYAVVSIMGPQSSGKSTLLNNLFHTNFREMDAFRGRTQTTQGIWIARATGIDPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEVLEPVLREDIQKIWDSVPKPPAHKQTPLSEFFNVEVTALSSYEEKEEQFKDQVMLLRQRFFNSIAPGGLAGDRRAVVPASGFPFSTQQIWKIIRENKDLDLPAHKVMVATVRCEEIANESLAKLESDEDWLELEEAVQSGPVLGFGKKISSILDKYFSDYDTEAAYFDESVRTTKRQHLESKSLDLVYPAYQAMLGHLRAKALNMFKEQLEQALKIGEAFAGAVRDCMETSLAEFDQGCVDATVQQATWDSLKTREKLRRDIDNHAASVRATKLSEISAQFEKRLSEALSEPVASLLDAGSRDTWPSIRKIFKRETDSAILDFSSSISGFEIDDKTANKMVENLKEYARSVVEKKAREEAGQVLIRMKERFSSLFSHDSDSMPRVWTGKENIRAITKDARSRSLKLLAVMAALxxxxxxxxxEEKTDKIESVLSSALLDNGDGSSAIQERSVSAIVSPLASSTWEEVSPSDTLITPVQCKSIWRQFKTETEYTVGQAIATQEASRRSSTFLPPPWAIVALLILGFNEFMLLLRNPLYLGVLFVLFLLVKALWVQLDIASIFQHGALSGILQLSTKFLPTVMGILKRLADEGQKVGASSNNANGSVQHVPLPDQESDFSSQGSSSASNLTYSGSMTHRQVGNVDMRVD*

Protein Length: 827

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGTATATCAAATGCTTGAAGAGAAGCTCACACAGACAGACGATTACAACAGCATCTGTGTCGAGATCGGCCTTGTTTCATCCTCTCAGTTGGATCCTATCTACAGAGCTACTGTTGCCCGATTTGGAGTGATTTTGTGGGTTGTTTGTTCGGCATTTCCAAGGAAGGAGACTTGTTATCAGGC_-_ATGGCCATGGAGGAATGTTGCTCTACTCAGCTTATTGATGGAGAAGGCAATTTCAATGAAGCTGGTCTTGACAAGTGCATGAAGGCCATGAAATTGGCAGATCAGGGACTCTCATATGCTGTAGTTTCTATCATGGGCCCCCAAAGCAGCGGAAAGAGCACACTCTTGAATAATCTTTTCCATACAAATTTCAGAGAGATGGATGCATTTAGGGGGAGGACTCAAACTACGCAGGGTATTTGGATAGCGAGGGCTACTGGTATTGATCCCTGTACACTAATCATGGATCTAGAGGGTACTGATGGGAGAGAAAGAGGAGAGGATGATACTGCATTTGAGAAACAGAGTGCATTATTTGCCTTGGCTGTTTCAGACATAGTGTTGATAAACATGTGGTGTCATGATATTGGCCGTGAGCAGGCAGCAAACAAGCCACTATTGAAAACAGTATTCCAGGTTATGATGCGTTTATTTAGTCCCCGCAAGACAACATTACTGTTTGTTATTCGGGACAAGACTAAGACTCCTCTAGAAGTGCTGGAACCTGTTCTTCGAGAAGATATTCAAAAGATATGGGATTCTGTTCCTAAGCCTCCTGCGCACAAACAAACCCCACTTAGTGAGTTCTTCAATGTGGAGGTGACAGCCTTATCCAGTTACGAGGAGAAGGAAGAGCAGTTCAAAGATCAGGTAATGTTGCTGAGACAACGGTTTTTCAACTCCATAGCACCAGGCGGACTTGCAGGTGACAGAAGGGCAGTTGTTCCTGCCTCAGGTTTTCCATTCAGTACACAACAGATCTGGAAAATTATTAGAGAGAATAAAGACCTTGACTTGCCTGCTCACAAGGTTATGGTTGCGACTGTTCGTTGTGAAGAGATTGCTAATGAAAGTCTTGCTAAATTGGAATCCGATGAGGATTGGCTAGAACTAGAGGAAGCTGTACAATCTGGTCCAGTGCTAGGGTTCGGGAAGAAAATAAGTTCCATTCTAGACAAGTATTTTTCAGATTATGACACAGAAGCAGCTTATTTTGATGAGAGTGTAAGAACAACCAAGCGTCAGCATTTGGAGTCCAAGTCATTGGATCTTGTCTATCCTGCTTATCAAGCGATGCTGGGACACCTCCGTGCTAAAGCTTTAAATATGTTTAAGGAGCAGCTTGAGCAGGCTCTTAAGATAGGAGAAGCATTTGCAGGGGCTGTTCGTGATTGTATGGAAACTTCTTTGGCAGAATTCGATCAAGGATGTGTAGATGCAACTGTTCAGCAAGCAACCTGGGACTCATTGAAAACCAGAGAAAAATTACGCCGTGATATTGACAACCATGCAGCTTCGGTTCGTGCCACGAAGCTGTCAGAAATTTCAGCACAATTTGAGAAGCGCCTTAGTGAAGCACTTTCTGAGCCAGTTGCATCTCTCCTTGATGCTGGTTCACGAGACACTTGGCCATCAATCAGGAAGATCTTTAAACGTGAGACCGACTCAGCAATATTGGATTTTTCATCTTCCATAAGTGGGTTTGAAATTGATGACAAGACTGCTAATAAGATGGTTGAGAACTTGAAAGAGTATGCAAGAAGTGTGGTTGAGAAAAAGGCTAGGGAAGAAGCTGGGCAAGTGTTGATCCGGATGAAGGAGAGGTTTTCAAGTTTGTTTAGTCATGATTCTGATTCAATGCCAAGGGTTTGGACTGGGAAAGAAAACATCCGAGCTATTACAAAAGATGCTCGTTCCAGGTCTTTGAAGCTGCTTGCTGTCATGGCTGCCTTACGxxxxxxxxxxxxxxxxxxxxxxxxAGAAGAAAAAACAGATAAAATTGAATCTGTGTTGTCGTCTGCCCTACTAGATAATGGTGATGGATCTAGTGCCATCCAAGAGAGAAGTGTCTCTGCTATAGTGAGCCCACTAGCGTCAAGCACTTGGGAGGAGGTTTCTCCTTCTGATACATTAATTACACCAGTGCAATGTAAGTCTATATGGAGGCAATTCAAAACAGAGACAGAGTATACAGTTGGGCAGGCTATTGCTACTCAGGAAGCCAGTAGGCGAAGTTCTACATTTTTGCCACCGCCATGGGCGATAGTTGCATTGTTAATTCTTGGATTCAACGAGTTCATGTTACTCCTGAGGAATCCATTATATCTTGGTGTGCTGTTTGTGCTTTTTCTGTTGGTAAAAGCACTATGGGTACAACTGGATATTGCAAGTATATTTCAGCATGGCGCTCTCTCTGGCATCCTTCAATTATCAACCAAGTTTCTTCCCACTGTCATGGGCATTCTAAAGAGGCTTGCTGATGAGGGGCAGAAGGTTGGAGCATCAAGTAACAATGCAAATGGTAGTGTTCAGCATGTGCCTTTGCCGGATCAAGAATCTGATTTTTCCTCTCAAGGCAGCTCATCTGCTAGTAATCTCACATACTCCGGTTCCATGACGCATAGACAAGTGGGTAATGTTGACATGAGAGTGGATTGA___TCGTGCTAGCTGATTGAATCTCTACCCATCGTTGGCAACTTCTCTTAAAATTATATTTGACAACAGAAATCATTGGAGTTAATTTGTCTCTTTAGATTCTATGTACACGAGTATTTTCTTTATGTACCATATGGAGTATGGTATTCTTCAACTGAAGCAATAACGAAAAGAAATTTGAAACAGTTGCTGCAAGGTTGATTGAAGGTCTCTCTAAATGATTTAGAGTTTAGGCATGGCTCTCAGTCTTATTCACGAGATCCATTTTCTCGGTTTCAGTGATCCATTTCAGAAGCAAGATATGTAAGTGGTGTTTTTTTCACTTGGAGGAATGGTTCCTCTGGGTTCATGTGTATTTTGAAAGCTACGTTCATTCAAGGATTCCAGGCATTGCTTTTTTTGTCGATTCATACTGGAAATTCTAGTATATTTATTGGTATCAACAATCGAGTGCTCATGCATTTGGATGTTTAATACTTTCTGTTTATAACCACATAGTTCTATCTGAGCATATGTGGGACCCTTTTTCACTTATTCAGTGTTGATGCTGATTCCTTTAATATCTTTACATTCTGCTCAGTGACGGGTGTTATTCTCTGGTTATTTGCAATTGCTGGAGTAGTGCCAACAAGACCAGAAAGGGGTGTGGTCTGCAGAACTATGAATTGTGTTCTAGATCTGGCTGTTCATTGTTCGTACATAGCTTGCATATCATTTGATATTGTAAAATCTATTAATGCTGACCCTCATCTCAGAAGTGAGAAGAACAGACTTCCGTAGGGTTGTTTGCA

Fln Alignment:

Contig20669___MEECCSTQLIDGEGNFNEAGLDKCMKAMKLADQGLSYAVVSIMGPQSSGKSTLLNNLFHTNFREMDAFRGRTQTTQGIWIARATGIDPCTLIMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLLFVIRDKTKTPLEVLEPVLREDIQKIWDSVPKPPAHKQTPLSEFFNVEVTALSSYEEKEEQFKDQVMLLRQRFFNSIAPGGLAGDRRAVVPASGFPFSTQQIWKIIRENKDLDLPAHKVMVATVRCEEIANESLAKXXXXXXXXXXXEAVQSGPVLGFGKKISSILDKYFSDYDTEAAYFDESVRTTKRQHLESKSLDLVYPAYQAMLGHLRAKALNMFKEQLEQALKIGEAFAGAVRDCMETSLAEFDQGCVDATVQQATWDSLKTREKLRRDIDNHAASVRATKLSEISAQFEKRLSEALSEPVASLLDAGSRDTWPSIRKIFKRETDSAILDFSSSISGFEIDDKTANKMVENLKEYARSVVEKKAREEAGQVLIRMKERFSSLFSHDSDSMPRVWTGKENIRAITKDARSRSLKLLAVMAALRxxxxxxxxEEKTDKIESVLSSALLDNGDGSSAIQERSVSAIVSPLASSTWEEVSPSDTLITPVQCKSIWRQFKTETEYTVGQAIATQEASRRSSTFLPPPWAIVALLILGFNEFMLLLRNPXXXXXXXXXXXXXXXXXVQLDIASIFQHGALSGILQLSTKFLPTVMGILKRLADEGQKVGASSNNANGS
P93042_______________MDAACSTQLIDGDGVFNVSGVDHFIKEVKLDECGLSYAVVSIMGPQSSGKSTLLNHLFGTNFREMDAFRGRSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAVSDIVLINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTLMFVIRDKTRTPLENLEPVLREDIQKIWDSVPKPQAHKETPLSDFFNVEVVALSSYEEKEEQFKEQVYNLRQRFFQSVAPGGLAGDRRGVVPANAFAFSAKQMWQVIKDNKDLDLPAHKVMVATVRCEEIANEKFSSFIANENWRELEEAVQSGPVSGFGRKLSSILQASLSEYDTEATYFEESVRSSKRQQLQEKLLQLVQPTFQDVLGHLRAGALENFKNAFEKALDAGEGFSSSAKSCAQSCISKFDKGCEEAVIEQAKWDTSKTREKLERDIEAHISSVRTAKLAELTTLYESKLNVALSGPVEALLDGANDETWPAIRKLLRREGELAVYGLSNALSGFEMDEETRSKMLADLENYARGIVETKAKEEAGRAMMRMKDRFATIFSHDSDSMPRVWTGKEDIRAITKMARSASLKLLSVMAVIRxxxxxxxxDDELDNIEKTLTLALF-NSTGNNATS-KSISTIDS-LASSTWEKVAPEKTLITPVQCKSLWRQFKNETEYTVTQAISAQEANRRNNNWLPPPWAILALVVLGFNEFMTLLRNPLWLLVLFVGYLVSKALWVQLNISGEFQNGVLPGLLSLSTKFIPTVMNLLKKLAEEGQAPPTNSNQSMNS

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
258	66		33		0.997452
260	66		33		0.997452
262		33	66		0.997452
263	33			66	0.997452
265	66	33			0.997452
266	66	33			0.997452
272			66	33	0.997452
273		33		66	0.997452
274	33	33	33		0.997753
276		66	33		0.997452
279	66		33		0.997452
2613		11	88		0.923564
2683	90		10		0.90298
2863	16			83	0.994512
2868	83			16	0.994512
2869		83	16		0.994512
2870	83		16		0.994512
2871		83		16	0.994512
2872		83	16		0.994512
2873	83			16	0.994512
2879	16			83	0.994512
2883		83		16	0.994512
3196		16		83	0.994512
3250		83		16	0.994512
3251	83	16			0.994512
3277	80		20		0.995493
3289	20			80	0.995493
3294	33		66		0.997452
3389		14	85		0.999981
3413		14		85	0.999981
3414		21	78		1.0
3415	7	21		71	1.0
3417		14		78	0.999974
3418	15		84		0.999986
3447	85		14		0.993533
3451	85	14			0.993533
3453	85			14	0.993533
3454	42		14		1.0
3455			14	71	0.984337
3458	71	14			0.984337
3460		14		85	0.993533
3461		14	71	14	0.984337
3462	71		14	14	0.984337
3464	71			14	0.984337
3465		14	71	14	0.984337
3467	14	85			0.993533
3469	71	14		14	0.984337
3470			83	16	0.994512
3471			83	16	0.994512
3473	16	83			0.994512
3475		83		16	0.994512
3477	83	16			0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain