SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20647

Length: 409 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene20647
CGTCGTGACCTTGGCTGTCACTCATGGGTTGTTTTTGGTGAACTTTTATGCACCACAAGGCAGTTTTTGATTTGTGTGACAGTAGTAGAGGAGGACTGGGTCTCTGCAATTCAACCTCATCCTACATATGATATCCGTCTGTTGAATGAACTTGCAATGCAGAAGAAAGTAATTTCTGGAGTTGGAAGTTGCGCTTTGAAGAGGTTCTGTGGGAAGAATAATTGCAATTTACATTCCCTTGTTGCTCGCATTCAACAAACCTGCAACAGCCATCGGATTGGTATAGAGGTCGACCATGATAAAAGAGAAGTACAACTCTTTTCTGTCTCAGAAAAAATGGACCAGGCATATGGCATGCTGGAAGATGTCTTGAACTGTGAAAGAAAGTGGATATACAATGAGGGCATAG

Ace file of the UniGene sp_v2.0_unigene20647

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	helicase , IBR and zinc finger protein domain-containing protein [Arabidopsis thaliana] gb\|AED91533.1\| helicase , IBR and zinc finger protein domain-containing protein [Arabidopsis thaliana]	-	-	3.0e-25	40%
FL-Next	sp=Putative uncharacterized protein At4g01020, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	40%
Blast2go	uncharacterized protein chloroplastic-like	-	-	5.37745e-30	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	5.37745e-30	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P0CE10

Fln msg: Distance to subject end: 754 aas, your sequence is shorter than subject: 136 - 1787

Fln protein: RRDLGCHSWVVFGELLCTTRQFLICVTVVEEDWVSAIQPHPTYDIRLLNELAMQKKVISGVGSCALKRFCGKNNCNLHSLVARIQQTCNSHRIGIEVDHDKREVQLFSVSEKMDQAYGMLEDVLNCERKWIYNEGI

Protein Length: 137

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGGGTTGTTTTTGGTGAACTTTTATGCACCACAAGGCAGTTTTTGATTTGTGTGACAGTAGTAGAGGAGGACTGGGTCTCTGCAATTCAACCTCATCCTACATATGATATCCGTCTGTTGAATGAACTTGCAATGCAGAAGAAAGTAATTTCTGGAGTTGGAAGTTGCGCTTTGAAGAGGTTCTGTGGGAAGAATAATTGCAATTTACATTCCCTTGTTGCTCGCATTCAACAAACCTGCAACAGCCATCGGATTGGTATAGAGGTCGACCATGATAAAAGAGAAGTACAACTCTTTTCTGTCTCAGAAAAAATGGACCAGGCATATGGCATGCTGGAAGATGTCTTGAACTGTGAAAGAAAGTGGATATACAATGAGGGCATAG

Fln Alignment:

Contig20647___SWVVFGELLCTTRQFLICVTVVEEDWVSAIQPHPTYDIRLLNELAMQKKVISGVGSCALKRFCGKNNCNLHSLVARIQQTCNSHRIGIEVDHDKREVQLFSVSEKMDQAYGMLEDVLNCERKWIYNE
P0CE10_______________SWVVFGELLSIVDQYLVCVTAFDFEALYMLDPPPPFDASQMDERRLRVKKVVGCSSTVLKRFCGKSNRSLLSIVSRARSLCSDERIGIQVDVDQNEIRLYASPLDMEKVSALVNDALECEKKWMRNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain