SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20629

Length: 895 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene20629 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cationic amino acid transporter n=1 Tax=Populus trichocarpa RepID=B9IPU4_POPTR	-	-	73%
FL-Next	tr=Cationic amino acid transporter; subsp. trichocarpa).	-	-	73%
Blast2go	cationic amino acid transporter	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Catalase.	EC:1.11.1.6	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Tryptophan metabolism	00380	83%
Blast2go	Methane metabolism	00680	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	photoperiodism	GO:0009648	Biological Process	83%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	83%
Blast2go	transport	GO:0006810	Biological Process	83%
Blast2go	cell death	GO:0008219	Biological Process	83%
Blast2go	response to cold	GO:0009409	Biological Process	83%
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	83%
Blast2go	cellular response to sulfate starvation	GO:0009970	Biological Process	83%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	83%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	83%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	83%
Blast2go	catalase activity	GO:0004096	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	peroxisome	GO:0005777	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%
Blast2go	plant-type vacuole membrane	GO:0009705	Cellular Component	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	83%
Blast2go	stromule	GO:0010319	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3		IPR015706	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9IPU4

Fln msg: Distance to subject end: 395 aas, your sequence is shorter than subject: 238 - 641

Fln protein: MGFFGVESQGLCGLRSMFRRKRVDSAHSKSQAGQLAKHLSVFQLIPIGVGSTIGAGVYVLVGTVAREHSGPALTISFLIAGIAAALSAFCYAELASRCPSAGSAYHYSYICVGEGIAWLIGWALILEYTVGGSAVARGISPNLAVFFGGEDNLPTFLVRRHIHGTDITVDPCAAILVMFVVGLLCVGIKESALVQSLVTFANVCVMLFVIIAGSVIGFWTGWAGYELSNGYFPYGING

Protein Length: 239

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACTATTTTCCCCCTGAGATTCACCGGTTATTTGCAATTCAATTCTCTCCTGAGGGAGCGAGGGAGGGAAGAACAGAGCTTCTTCCCTGCTGTTCTCTTCGCACTCCTTTTAAATGAGTCAGCAGAAGAGGGTGCTTTAGTTAGATTGAATACAC_-_ATGGGGTTCTTCGGGGTCGAATCTCAGGGCCTTTGTGGGTTGCGGAGCATGTTCAGAAGAAAACGGGTTGATTCTGCTCATAGTAAATCTCAGGCAGGCCAGCTTGCCAAGCATCTCTCCGTGTTTCAGCTAATCCCCATTGGTGTTGGTTCAACTATAGGAGCTGGTGTCTATGTCCTTGTTGGCACAGTTGCCAGGGAGCATTCAGGACCAGCCCTTACAATCTCATTTCTTATAGCTGGAATAGCTGCTGCACTTTCAGCATTTTGTTATGCTGAACTTGCAAGTCGTTGTCCATCCGCAGGCAGCGCATATCATTATTCATACATCTGTGTTGGAGAAGGGATTGCTTGGCTGATTGGTTGGGCACTTATTTTGGAGTATACAGTAGGTGGATCTGCTGTTGCCCGTGGTATCTCTCCCAATCTGGCTGTATTCTTTGGGGGAGAAGATAATCTGCCCACATTTTTAGTTCGTCGACATATTCATGGCACTGATATCACAGTTGACCCTTGTGCTGCAATTCTTGTCATGTTTGTTGTTGGTCTCCTTTGTGTGGGAATCAAAGAGAGTGCATTGGTGCAATCCCTTGTCACATTTGCAAATGTATGTGTCATGTTGTTCGTCATTATAGCTGGAAGTGTTATTGGTTTTTGGACTGGTTGGGCTGGATATGAGCTGTCCAATGGGTATTTCCCATATGGAATCAATGGGAT

Fln Alignment:

Contig20629___MGFFGVESQGLCGL------RSMFRRKRVDSAHSKSQAG-QLAKHLSVFQLIPIGVGSTIGAGVYVLVGTVAREHSGPALTISFLIAGIAAALSAFCYAELASRCPSAGSAYHYSYICVGEGIAWLIGWALILEYTVGGSAVARGISPNLAVFFGGEDNLPTFLVRRHIHGTDITVDPCAAILVMFVVGLLCVGIKESALVQSLVTFANVCVMLFVIIAGSVIGFWTGWAGYELSNGYFPYGING
B9IPU4_______________MGFLVDSHKGGCGVGGGGCFRSLIRRKQVDSVHSKGHGHHRLAKELSILHLIAIGVGSTIGAGVYILVGTVAREHSGPALFLSFLVAGIAAALSAFCYAELASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLALFFGGQDNLPTFLARQHIPGLDVVVDPCAAVLVLVVTGLLCVGIKESTLAQAIVTSINVCAMLFIIIAGTYLGFKTGWAGYELPTGYFPFGVDG

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
214		66		33	0.997452
215			33	66	0.997452
221		33		66	0.997452
223			33	66	0.997452
227	33		66		0.997452
228			33	66	0.997452
230		66		33	0.997452
233		33		66	0.997452
236	66	33			0.997452
237			33	66	0.997452
656		83		16	0.994512
659	16			83	0.994512
660			16	83	0.994512
662		83	16		0.994512
664	16			83	0.994512
666	14			85	0.993533
669	77	22			0.999999
672	22			77	0.999999
674		77	22		0.999999
678	22		77		0.999999
680	77		22		0.999999
683		77	22		0.999999
852		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain