SustainPineDB

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Assembly info
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20578

Length: 351 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene20578
CGTCGTGACCTTGGCTGTCACTCAGGGACGACTCAACAGTCTGTGTACTTTCATTGGTGGGGTTTAACGCTACTGAGGATTTGGAGGCATTCTGTTTCTTCTCCATGGATCTAAGATGGATTCCATTGCTCTTGTCTGTGCTATGCCTGATATCGCTATTGAATGTATTCGTTTCAGCCTATGAACCGGTGTTTTATGAGCCCTTCGACAAGCCGTTCGAAGGGAGATGGATTGTATCCAAAAAAACGACTATAAAGGTGTGTGGAAGCACGAGAAGAGTGAAGGTCATGAAGATTATGGTCTCCTTGTGAGTGAAGCGGCAAGAAAGTATGCCATAGTAAGAGAATTACC

Ace file of the UniGene sp_v2.0_unigene20578

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	calnexin 1 [Arabidopsis thaliana] sp\|P29402.1\|CALX1_ARATH RecName: Full=Calnexin homolog 1; Flags: Precursor emb\|CAA79144.1\| calnexin homolog [Arabidopsis thaliana] dbj\|BAB10079.1\| calnexin homolog precursor [Arabidopsis thaliana] gb\|AAL24362.1\| calnexin	-	-	4.0e-15	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	calnexin 1	-	-	4.1937e-22	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	Mo-molybdopterin cofactor biosynthetic process	GO:0006777	Biological Process	4.1937e-22	92%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	4.1937e-22	92%
Blast2go	molybdenum ion binding	GO:0030151	Molecular Function	4.1937e-22	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	4.1937e-22	92%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	4.1937e-22	92%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	4.1937e-22	92%
Blast2go	microsome	GO:0005792	Cellular Component	4.1937e-22	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	4.1937e-22	92%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	4.1937e-22	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	4.1937e-22	92%

Source	InterPros	Term	Type	Identity
Sma3	Calreticulin/calnexin	IPR001580	-	-
Sma3	Calreticulin/calnexin, P	IPR009033	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Calreticulin/calnexin, conserved site	IPR018124	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PT78

Fln msg: Overlapping hits, possible frame ERROR between 257 and 239, Distance to subject end: 463 aas, your sequence is shorter than subject: 82 - 549

Fln protein: MDLRWIPLLLSVLCLISLLNVFVSAYEPVFYEPFDKPFEGRWIVxxxxxxxxVWKHEKSEGHEDYGLLVSEAARKYAIVREL

Protein Length: 83

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGACGACTCAACAGTCTGTGTACTTTCATTGGTGGGGTTTAACGCTACTGAGGATTTGGAGGCATTCTGTTTCTTCTCC_-_ATGGATCTAAGATGGATTCCATTGCTCTTGTCTGTGCTATGCCTGATATCGCTATTGAATGTATTCGTTTCAGCCTATGAACCGGTGTTTTATGAGCCCTTCGACAAGCCGTTCGAAGGGAGATGGATTGTAxxxxxxxxxxxxxxxxxxxxxxxxGTGTGGAAGCACGAGAAGAGTGAAGGTCATGAAGATTATGGTCTCCTTGTGAGTGAAGCGGCAAGAAAGTATGCCATAGTAAGAGAATTACC

Fln Alignment:

Contig20578___SMDLRWIPXXXXXXXXXXXXNVFVSAYEPVFYEPFDKPFEGRWIVSxxxxxxGVWKHEKSEGHEDYGLLVSEAARKYAIVREL
C0PT78_______________SMDRRWIPSLLAAVCLISSLNVLVSASEQTFYESFDESFDGRWIASxxxxxxGVWKHEKSEGHEDYGLLVSEVAKKYAIVREL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain