SustainPineDB

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Assembly info
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SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20401

Length: 412 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene20401
CGTCGTGACCTTGGCTGTCACTCAAACAGAAAGGTGGTCAATTCAGGGAAGCGTTTGAGGGCATATGTGAACTTGGATGAAGCAGTTGTATGTGGCATGTGCAACCTAAGAAGCTCCTGTAACAGGGCAGACGTAAAGCCCGACCAAGGGGAAGATGCACGGATGGATGATATAATGCGGGTGTTGCTTACTTACGGGCTTGATCCTCTGGTGGGTTCGACTTCGAATGAGTTACATATGAGAGAAACAATAATAGCATCTGTTCATAAGTTGCTGAAAGAGGTGGTTCAGTTGAGTGCAACTCCACTTGATCCAAACTTTCCCAGGCCTAAGCCCGAGCAGTCTTTTCCAAGAAAAAAGCAGTCACCACATCTGCTGATGAAGAAAACCAGGCATTACTGATGTTGAAATG

Ace file of the UniGene sp_v2.0_unigene20401

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA polymerase n=1 Tax=Ricinus communis RepID=B9RF68_RICCO	-	-	3.0e-22	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	33%
Blast2go	dna polymerase zeta catalytic	-	-	3.9962e-26	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	3.9962e-26	64%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RanBP2-type	IPR001876	-	-
Sma3	DNA-directed DNA polymerase, family B, multifunctional domain	IPR006134	-	-
Sma3	DNA-directed DNA polymerase, family B	IPR006172	-	-
Sma3	DNA-directed DNA polymerase, family B, conserved site	IPR017964	-	-
Sma3		IPR017966	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LP53

Fln msg: your sequence is shorter than subject: 134 - 514

Fln protein: RRDLGCHSNRKVVNSGKRLRAYVNLDEAVVCGMCNLRSSCNRADVKPDQGEDARMDDIMRVLLTYGLDPLVGSTSNELHMRETIIASVHKLLKEVVQLSATPLDPNFPRPKPEQSFPRKKQSPHLLMKKTRHY*

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACAGAAAGGTGGTCAATTCAGGGAAGCGTTTGAGGGCATATGTGAACTTGGATGAAGCAGTTGTATGTGGCATGTGCAACCTAAGAAGCTCCTGTAACAGGGCAGACGTAAAGCCCGACCAAGGGGAAGATGCACGGATGGATGATATAATGCGGGTGTTGCTTACTTACGGGCTTGATCCTCTGGTGGGTTCGACTTCGAATGAGTTACATATGAGAGAAACAATAATAGCATCTGTTCATAAGTTGCTGAAAGAGGTGGTTCAGTTGAGTGCAACTCCACTTGATCCAAACTTTCCCAGGCCTAAGCCCGAGCAGTCTTTTCCAAGAAAAAAGCAGTCACCACATCTGCTGATGAAGAAAACCAGGCATTACTGA___TGTTGAAATG

Fln Alignment:

Contig20401___GCHS-NRKVVNSGKRLRAYVNLDEAVVCGMCNLRSSCNRADVKPDQGEDARMDDIMRVLLTYGLDPLVGSTSNELHMRETIIASVHKLLKEVVQLSAT
B8LP53_______________GCPSLEKKDVFAAKRLRSFFNIEQGTACRPCNLKDTCSAPFAKVSKVKSLTAEDVVRLLCTFGLN----AEKNELSIPDDVKQSVVNLLKELVDFSTS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain