SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20389

Length: 1942 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene20389

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM23_MARPO	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	81%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	81%
Blast2go	post-embryonic development	GO:0009791	Biological Process	81%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	81%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	81%
Blast2go	plasma membrane	GO:0005886	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: No stop codon before M and low homology subject, your sequence is shorter than subject: 412 - 431

Fln protein: MATIYYLFCNPKSKSKYSHPAWLPLPLYGGNSHSMGSKVSKSSSRSYVSSAPSNLGRYFTFAEIQQATNKFDESLLLGVGGFGKVYHGRLEDGTQVAVKRGNPRSEQGLTEFQTEIEMLSKLRHRHLVSLIGYCEEHSEMILVYEYMANGTLRSHLYGSNLPPLSWKQRLEVCIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKTGPTLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEVLCARPALNPVLPREQVNIAEWAMHWQKKGMLEKIIDAHLVGTINPGSLKKLGETAEKCLEEQGIDRPAMGDVLWNLEYAFQLQETAMQNDPDENSTNHIADLPLHCPEPEPFDTSVIGRGVGGSDDDLEDATTSAVFSQLVNPRGR*

Protein Length: 413

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTGGATGGTCCTTATTCTGTTAATGGTGTCATTCCTAGTTCATCGAAAAGCAGCAGCAAGGTAGGTCCCATTGTAGGATCGGTGGTGGGATTTGCTGCCCTCCTTGGGCTG_-_ATGGCTACCATCTATTACCTATTTTGCAATCCAAAGTCAAAGTCAAAGTATTCTCATCCTGCTTGGTTGCCTCTTCCTTTGTATGGAGGAAATTCCCATAGCATGGGTAGTAAAGTTTCCAAGAGTAGTTCTAGGAGTTATGTTTCCTCAGCACCCTCAAACCTTGGCCGTTACTTCACATTTGCTGAGATACAGCAAGCCACAAACAAATTTGATGAGAGTTTGCTTCTCGGTGTTGGTGGCTTTGGCAAGGTTTATCATGGACGGCTAGAGGATGGTACTCAAGTGGCTGTAAAGCGAGGTAATCCCAGATCTGAGCAGGGTCTCACTGAATTCCAGACAGAAATTGAAATGTTGTCAAAGCTTCGCCATCGCCATCTTGTATCTCTGATTGGTTATTGTGAGGAGCATTCTGAGATGATTCTGGTCTATGAATACATGGCTAATGGGACTCTTAGAAGTCATTTGTATGGATCAAATCTTCCTCCATTGTCGTGGAAACAGAGGCTTGAGGTATGTATAGGAGCAGCCAGGGGTCTCCATTACCTGCATACCGGGGCAGCTCAAGGTATCATTCACAGAGATGTGAAGACCACCAACATTTTGTTGGATGAGAATTTTGTGGCAAAGGTGGCAGACTTTGGACTTTCAAAGACTGGACCCACTCTGGATCAGACTCATGTAAGTACTGCAGTGAAAGGTAGTTTTGGGTACCTTGATCCCGAATACTTCAGAAGGCAGCAACTGACAGAGAAATCTGATGTTTATTCTTTTGGAGTAGTGTTACTGGAGGTCTTGTGTGCAAGGCCAGCTCTTAATCCTGTTCTCCCCAGAGAACAAGTCAATATAGCAGAGTGGGCAATGCACTGGCAGAAAAAGGGCATGCTTGAAAAGATCATTGATGCTCACCTTGTTGGGACCATTAACCCTGGTTCTCTGAAAAAGCTTGGGGAAACTGCCGAAAAGTGCTTGGAAGAGCAGGGAATTGACAGGCCTGCCATGGGAGATGTTCTATGGAACCTGGAATATGCATTTCAACTACAGGAGACAGCCATGCAAAATGATCCAGATGAGAATAGTACAAATCATATTGCAGACCTTCCTTTGCACTGCCCAGAGCCTGAGCCTTTTGATACTAGCGTTATTGGCAGAGGTGTTGGTGGGAGTGATGATGATTTAGAAGATGCGACCACAAGTGCAGTGTTCTCACAATTGGTGAATCCTCGTGGGAGGTGATCACAGAACAATTTAACTTCGGAATGCAGCTAACTGGATGCAGATTACTACACAACTTTGTAGCTGTCCAACTGGCTCTATGAATGCAGGTGCCCTGTCCTATCTCCTGGTTACACCAAACACCAGAACCAAACTTTATGCCGCAAAGTTCAAGCTTCAAAGGGAGCTATATCCACGCTATTTGATTTTTCATATTTTTTCCTCCGTCTGCCTGATGTTTCAATCTTATATTATTTCACATTTTAAATGTTTATTTTTCGATGATTTATTTTAGATTTCAAGCCTGTCCAACGTATTGAAGCTTGCCTTGGGAAGCTGTAAAATATCCCGTGTCTAAGCTGCATTCACTTTTAGACTTTATATGTTCTTTTTTCCTCTTTGTGAACGATCCATTGGGTGGCACTCAAAATTTCTGTAGACTTTAGAGATTCTGATGTTCTTCACTGAATAATTCAGAATTTATATATAGATTGTATTTCCGGAGAGCTGCATCCGGATTGCCTAACTTTTAATGCAAGTTTTCTTGGCAGCAAATTCAGAAAGGGATGAAATAAATCAGAAGCTTCTTAC

Fln Alignment:

Contig20389___FTFAEIQQATNKFDESLLLGVGGFGKVYHGRLED----------GTQVAVKRGNPRSEQGLTEFQTEIEMLSKLRHRHLVSLIGYCEEHSEMILVYEYMANGTLRSHLYGSNLPPLSWKQRLEVCIGAARGLHYLHTGAAQGIIHRDVKTTNILLDENFVAKVADFGLSKTGPTLDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEVLCARPALNPVLPREQVNIAEWAM-HWQKKGMLEKIIDAHLVGTINPGSLKKLGETAEKCLEEQGIDRPAMGDVLWNLEYAFQLQETA
B8LKY1_______________FTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTA

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
24	66		33		0.997452
27			33	66	0.997452
28			66	33	0.997452
31		33		66	0.997452
32		33	66		0.997452
33			66	33	0.997452
36		66	33		0.997452
39			33	66	0.997452
40	66			33	0.997452
41		33		66	0.997452
42	33			66	0.997452
46		33		66	0.997452
47	33			66	0.997452
580	12	87			0.992554
581		12		87	0.992554
583	87			12	0.992554
650		14	85		0.993533
651		14	85		0.993533
656			14	85	0.993533
657	83	16			0.994512
662	83			16	0.994512
666		16	83		0.994512
667		83		16	0.994512
771	16		83		0.994512
772		83		16	0.994512
774			83	16	0.994512
775	83			16	0.994512
945	16	83			0.994512
1003	83		16		0.994512
1317			75	25	0.996473
1452			12	87	0.992554
1457	87	12			0.992554
1458		12		87	0.992554
1459			87	12	0.992554
1460		85		14	0.993533
1461	85		14		0.993533
1463		14	85		0.993533
1466		85		14	0.993533
1468	14	85			0.993533
1469		14		85	0.993533
1473	14	85			0.993533
1546		40		60	1.0
1638		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
168	185	CAAAGT CAAAGT CAAAGT	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain