SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20255

Length: 410 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene20255
CAGTCAATACGGGCGCTCGTCGGAGTCGAAGACATTGGTCTCCGAGCGGAAGCGACGCGGCAGACTGAATGAAAAGCTCTATACTTTGCGCTCCCTTGTTCCAAAGATCACAAAGATGGATAAAGCATCCATAGTGGGAGACGCCATCGACTATGTACAGGATTTGCAGAAACAAGTTAAAGACATACAGGCTGAAATCGAGGGCCTTCGATCTAACTTAAACAACCGGAATGATCCCACACCTCGTGACAGGGAGAATTCAGCGGTTTCCGGTTTGACCAACGAAATGCAGTCGTACGAAAAGGGAAGCACCAGTCACCCTCCTCCTCTTCCTAACAAATCTCCAACGCTGCAGAAACTTGACCTGGATGTAACCAAGGTCGAGGATACGAACGTTTCATAACACAAGA

Ace file of the UniGene sp_v2.0_unigene20255

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative basic helix-loop-helix protein BHLH21 n=1 Tax=Lotus japonicus RepID=C0JP28_LOTJA	-	-	8.0e-19	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	transcription factor fer-like iron deficiency-induced transcription factor-like	-	-	5.20166e-23	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular response to iron ion	GO:0071281	Biological Process	5.20166e-23	79%
Blast2go	cellular response to ethylene stimulus	GO:0071369	Biological Process	5.20166e-23	79%
Blast2go	regulation of iron ion transport	GO:0034756	Biological Process	5.20166e-23	79%
Blast2go	cellular response to nitric oxide	GO:0071732	Biological Process	5.20166e-23	79%
Blast2go	identical protein binding	GO:0042802	Molecular Function	5.20166e-23	79%

Source	InterPros	Term	Type	Identity
Sma3		IPR001092	-	-
Sma3		IPR008512	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	Achaete-scute transcription factor-related	IPR015660	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRN6

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 71 aas, your sequence is shorter than subject: 134 - 256

Fln protein: SQYGRSSESKTLVSERKRRGRLNEKLYTLRSLVPKITKMDKASIVGDAIDYVQDLQKQVKDIQAEIEGLRSNLNNRNDPTPRDRENSAVSGLTNEMQSYEKGSTSHPPPLPNKSPTLQKLDLDVTKVEDTNVS*

Protein Length: 135

Fln nts: CAGTCAATACGGGCGCTCGTCGGAGTCGAAGACATTGGTCTCCGAGCGGAAGCGACGCGGCAGACTGAATGAAAAGCTCTATACTTTGCGCTCCCTTGTTCCAAAGATCACAAAGATGGATAAAGCATCCATAGTGGGAGACGCCATCGACTATGTACAGGATTTGCAGAAACAAGTTAAAGACATACAGGCTGAAATCGAGGGCCTTCGATCTAACTTAAACAACCGGAATGATCCCACACCTCGTGACAGGGAGAATTCAGCGGTTTCCGGTTTGACCAACGAAATGCAGTCGTACGAAAAGGGAAGCACCAGTCACCCTCCTCCTCTTCCTAACAAATCTCCAACGCTGCAGAAACTTGACCTGGATGTAACCAAGGTCGAGGATACGAACGTTTCATAACACAAGA

Fln Alignment:

Contig20255___SKTLVSERKRRGRLNEKLYTLRSLVPKITKMDKASIVGDAIDYVQDLQKQVKDIQAEIEGLRSNLNNRNDPTPRDRENSAVSGLTN
B8LRN6_______________SKNLHTERKRRKKLNDTLYTLRSVVPKISKMDKQSIIGDAISYVLDLQKTIREIEGEIEGLCS--SNKGDHTQRTPQ--TMNPLTN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain