SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene20185

Length: 1604 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene20185 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	lecithine cholesterol acyltransferase-like protein [Medicago truncatula]	-	-	54%
FL-Next	sp=Lecithin-cholesterol acyltransferase-like 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	53%
Blast2go	lecithin-cholesterol acyltransferase-like 1	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Lecithin:cholesterol/phospholipid:diacylglycerol acyltransferase	IPR003386	-	-
Sma3	Hly-III-related	IPR004254	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FZI8

Fln msg:

Fln protein: MAITISLIFILALLMALTPNCTAYSFEIHTGKSADISRAQSAYTQQNNNIYTSSKLHPVVIVPGTGGNQVEARLTADYKPSGLLCRRWNWEREWFRIWFDVPVVLPPLTQCFADRISLVYDPHTDEYYNAPGVETRVPYFGSTEGMKYLDPCFKYITPYMSSLVKSLEDVGYVDGKSLFGAPYDFRYGPGTKSSSVGAKYLENLRKLVEEAYTSNDNKQVILVSHSLGGLWVLHFLNRQPLSWRKQYVKHFVAIAAPWGGTVQEMRTFASGYSLGIPLVNPLLVREEQRSSESNLWLLPVPEVFGNRTLVITEQGHYSASDMPEFFTDIGFSEGIARYKSRIRPLTEHLEAPRVPITLIFGTGVSTPEMLIYGKVGFDQQPEVIEGDGDGTVNLCSLSAVISNWSAAEDQTIKVVKIPQSTHTTILKNNDSIQQIVDEILSANINWKYSVLK*

Protein Length: 454

Fln nts: CGTTAATCAAGA_-_ATGGCCATCACAATTTCTCTTATCTTCATCCTTGCTCTCCTGATGGCTTTAACCCCAAATTGCACTGCTTACTCTTTTGAAATACACACAGGCAAGTCAGCAGACATATCCAGAGCTCAATCGGCATATACGCAGCAAAACAACAACATATATACAAGCAGTAAACTCCATCCTGTAGTGATAGTCCCAGGCACAGGAGGAAATCAGGTTGAAGCAAGGCTAACTGCAGACTATAAACCCAGTGGGCTGTTGTGCAGAAGGTGGAACTGGGAGAGGGAGTGGTTCAGAATATGGTTTGATGTTCCTGTCGTTCTTCCTCCATTGACACAATGCTTTGCTGACAGAATAAGCTTGGTCTATGATCCCCACACAGATGAATACTACAATGCCCCTGGGGTGGAGACTAGAGTGCCTTATTTTGGTTCAACAGAAGGAATGAAGTACCTTGATCCTTGCTTCAAGTATATAACGCCATACATGTCATCCTTGGTGAAATCTCTTGAGGATGTTGGATATGTTGATGGTAAATCCCTTTTTGGTGCACCCTATGATTTCCGTTACGGTCCTGGAACAAAGTCCTCTTCTGTGGGGGCAAAGTATTTGGAAAATCTGAGAAAATTGGTGGAGGAGGCGTACACATCAAATGACAATAAGCAAGTCATTCTTGTTTCACACAGTTTAGGAGGACTGTGGGTACTGCATTTCTTGAATCGGCAGCCTTTGTCATGGCGGAAGCAGTATGTCAAACACTTTGTTGCCATTGCAGCACCATGGGGAGGAACAGTACAAGAAATGAGAACATTTGCATCTGGTTATTCTCTTGGTATCCCTCTTGTAAACCCCTTACTAGTTAGGGAAGAACAAAGGAGCTCTGAGAGTAATCTCTGGCTTCTTCCAGTTCCTGAAGTATTTGGAAATAGGACTCTGGTCATAACGGAACAAGGACATTATTCAGCTTCAGATATGCCAGAGTTCTTTACAGACATAGGCTTTTCTGAAGGCATTGCTCGCTACAAATCTAGAATTCGTCCTTTGACAGAACATTTGGAAGCTCCCAGGGTACCCATAACCTTAATTTTTGGAACAGGAGTCAGTACTCCTGAGATGCTCATCTATGGCAAAGTTGGTTTTGATCAACAGCCTGAAGTTATAGAGGGTGATGGCGATGGGACTGTGAACTTGTGCAGCTTGTCTGCAGTTATATCAAATTGGTCTGCAGCAGAAGATCAAACAATAAAAGTGGTAAAAATTCCGCAAAGTACTCATACCACCATCCTTAAAAACAATGATTCAATTCAACAGATAGTTGATGAGATTCTGAGTGCTAATATAAACTGGAAATATTCTGTTCTAAAGTAA___TTAGGCATAGCACAAAGTAAAATTCTATTCATGATACTAGACAATAGCATTTATAAATAGCCTAGGGCCCTAGGCAATTGAGACCGTGATTCCCAAGATTGGTTAATTTTACCCTAAGTGCTAGGGCTTTGTTGATCATATATGTAACAAGTGTAAGGCACTGCCTTGAGTGTGCTAAATAGCTATGAATTTATGATGTGTACTGTTACTAGTATCTAGATCACATTATTTCG

Fln Alignment:

Contig20185___SKLHPVVIVPGTGGNQVEARLTADYKPSGLLCRRWNWERE-----WFRIWFDVPVVLPPLTQCFADRISLVYDPHTDEYYNAPGVETRVPYFGSTEGMKYLDPCFKYITPYMSSLVKSLED-VGYVDGKSLFGAPYDFRYGPGTKS--SSVGAKYLENLRKLVEEAYTSNDNKQVILVSHSLGGLWVLHFLNRQPLSWRKQYVKHFVAIAAPWGGTVQEMRTFASGYSLGIPLVNPLLVREEQRSSESNLWLLPVPEVFGNRT--LVITEQGHYSASDMPEFFTDIGFSEGIARYKSRIRPLTEHLEAPRVPITLIFGTGVSTPEMLIYGKVGFDQQPEVIEGDGDGTVNLCSLSAVISNWSAAEDQTIKVVKIPQSTHTTILKNNDSIQQIVDEILSAN
Q9FZI8_______________SNVYPLILVPGNGGNQLEVRLDREYKPSSVWCSSWLYPIHKKSGGWFRLWFDAAVLLSPFTRCFSDRMMLYYDPDLDDYQNAPGVQTRVPHFGSTKSLLYLDPRLRDATSYMEHLVKALEKKCGYVNDQTILGAPYDFRYGLAASGHPSRVASQFLQDLKQLVEKTSSENEGKPVILLSHSLGGLFVLHFLNRTTPSWRRKYIKHFVALAAPWGGTISQMKTFASGNTLGVPLVNPLLVRRHQRTSESNQWLLPSTKVFHDRTKPLVVTPQVNYTAYEMDRFFADIGFSQGVVPYKTRVLPLTEELMTPGVPVTCIYGRGVDTPEVLMYGKGGFDKQPEIKYGDGDGTVNLASLAAL-------KVDSLNTVEIDGVSHTSILKDEIALKEIMKQISIIN

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
272		20		80	0.995493
289			20	80	0.995493
368		25		75	1.0
430	25		75		1.0
470	66	33			1.0
474		16		83	0.994512
504		33		66	1.0
517	33	66			1.0
558		10		90	0.90298
560	90	10			0.90298
562	90			10	0.90298
581		11		88	0.923564
610	11		88		0.923564
624		71	28		1.0
625	14			85	0.993533
627			85	14	0.993533
628		85	14		0.993533
630		12		87	0.992554
632			12	87	0.992554
634		12		87	0.992554
639		87	12		0.992554
641		12	87		0.992554
643	87	12			0.992554
644			12	87	0.992554
646	87	12			0.992554
647			12	87	0.992554
649		14		85	0.993533
650		42	14	42	1.0
651	14	57		28	1.0
652	14		14	71	0.984337
655	16			83	0.994512
658	16	83			0.994512
660		16		83	0.994512
661		16		83	0.994512
663	16			83	0.994512
665	83		16		0.994512
666		83		16	0.994512
713	14			85	0.993533
715	85		14		0.993533
759		83		16	0.994512
796		33		66	1.0
797		66		33	1.0
829			16	83	0.994512
871		57		42	1.0
881		85		14	0.993533
968		25		75	0.996473
972		75		25	0.996473
1078	60		40		1.0
1095			80	20	0.995493
1096	80			20	0.995493
1131	60		40		1.0
1257			75	25	0.996473
1258		75		25	0.996473
1329	33		66		0.997452
1385		33		66	1.0
1386	66		33		0.997452
1390	33	66			0.997452
1391	33			66	0.997452
1392		33	66		0.997452
1395	33			66	0.997452
1417		66	33		0.997452
1466		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain